Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 PARP8-218ENST00000513738 596 ntTSL 4 BASIC13.66□□□□□ -0.22
HOXD4P09016 GTF2H2C-215ENST00000514162 610 ntTSL 5 BASIC13.66□□□□□ -0.22
HOXD4P09016 AC022616.1-201ENST00000518688 554 ntBASIC13.66□□□□□ -0.22
HOXD4P09016 AP002748.3-205ENST00000525142 567 ntTSL 3 BASIC13.66□□□□□ -0.22
HOXD4P09016 AP002748.3-203ENST00000533502 581 ntTSL 3 BASIC13.66□□□□□ -0.22
HOXD4P09016 TPO-215ENST00000539820 1157 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
HOXD4P09016 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC13.66□□□□□ -0.22
HOXD4P09016 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC13.66□□□□□ -0.22
HOXD4P09016 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC13.66□□□□□ -0.22
HOXD4P09016 AL133523.1-201ENST00000554537 331 ntTSL 3 BASIC13.66□□□□□ -0.22
HOXD4P09016 CRISPLD2-210ENST00000569090 808 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
HOXD4P09016 SAMD11P1-201ENST00000571429 661 ntBASIC13.66□□□□□ -0.22
HOXD4P09016 DIO1-215ENST00000610607 796 ntTSL 5 BASIC13.66□□□□□ -0.22
HOXD4P09016 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
HOXD4P09016 GPR68-203ENST00000531499 2859 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
HOXD4P09016 AC068888.1-207ENST00000546793 2863 ntTSL 2 BASIC13.66□□□□□ -0.22
HOXD4P09016 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
HOXD4P09016 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
HOXD4P09016 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
HOXD4P09016 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
HOXD4P09016 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
HOXD4P09016 MYD88-203ENST00000417037 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
HOXD4P09016 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
HOXD4P09016 SRD5A3-201ENST00000264228 4190 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
HOXD4P09016 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
HOXD4P09016 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC13.65□□□□□ -0.22
HOXD4P09016 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
HOXD4P09016 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
HOXD4P09016 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC13.65□□□□□ -0.22
HOXD4P09016 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC13.65□□□□□ -0.22
HOXD4P09016 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
HOXD4P09016 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
HOXD4P09016 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC13.65□□□□□ -0.22
HOXD4P09016 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
HOXD4P09016 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
HOXD4P09016 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
HOXD4P09016 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
HOXD4P09016 AGER-203ENST00000375065 665 ntTSL 2 BASIC13.65□□□□□ -0.22
HOXD4P09016 MPV17-205ENST00000402310 906 ntTSL 5 BASIC13.65□□□□□ -0.22
HOXD4P09016 MIR1202-201ENST00000408529 83 ntBASIC13.65□□□□□ -0.22
HOXD4P09016 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC13.65□□□□□ -0.22
HOXD4P09016 AC004945.1-201ENST00000416738 983 ntBASIC13.65□□□□□ -0.22
HOXD4P09016 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC13.65□□□□□ -0.22
HOXD4P09016 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
HOXD4P09016 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC13.65□□□□□ -0.22
HOXD4P09016 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC13.65□□□□□ -0.22
HOXD4P09016 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC13.65□□□□□ -0.22
HOXD4P09016 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC13.65□□□□□ -0.22
HOXD4P09016 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC13.65□□□□□ -0.22
HOXD4P09016 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC13.65□□□□□ -0.22
HOXD4P09016 C2orf69P2-201ENST00000562032 1123 ntBASIC13.65□□□□□ -0.22
HOXD4P09016 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC13.65□□□□□ -0.22
HOXD4P09016 DBNDD1-206ENST00000568838 993 ntTSL 2 BASIC13.65□□□□□ -0.22
HOXD4P09016 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC13.65□□□□□ -0.22
HOXD4P09016 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
HOXD4P09016 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC13.65□□□□□ -0.22
HOXD4P09016 AL118558.3-201ENST00000607414 1079 ntBASIC13.65□□□□□ -0.22
HOXD4P09016 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC13.65□□□□□ -0.22
HOXD4P09016 ENPP7P14-201ENST00000621765 1040 ntBASIC13.65□□□□□ -0.22
HOXD4P09016 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
HOXD4P09016 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
HOXD4P09016 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC13.65□□□□□ -0.22
HOXD4P09016 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
HOXD4P09016 CA12-202ENST00000344366 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
HOXD4P09016 ZNF663P-201ENST00000400371 2722 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
HOXD4P09016 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
HOXD4P09016 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC13.65□□□□□ -0.22
HOXD4P09016 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC13.65□□□□□ -0.22
HOXD4P09016 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
HOXD4P09016 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.22
HOXD4P09016 AC027612.1-201ENST00000445234 2395 ntBASIC13.65□□□□□ -0.22
HOXD4P09016 PTPA-205ENST00000357197 2653 ntTSL 2 BASIC13.65□□□□□ -0.22
HOXD4P09016 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
HOXD4P09016 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC13.64□□□□□ -0.23
HOXD4P09016 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
HOXD4P09016 USP17L2-201ENST00000333796 1910 ntAPPRIS P1 BASIC13.64□□□□□ -0.23
HOXD4P09016 MED4-201ENST00000258648 2022 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
HOXD4P09016 AL390755.1-201ENST00000623716 2027 ntBASIC13.64□□□□□ -0.23
HOXD4P09016 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
HOXD4P09016 MECR-202ENST00000373791 2416 ntTSL 2 BASIC13.64□□□□□ -0.23
HOXD4P09016 AC006504.5-208ENST00000588784 2401 ntBASIC13.64□□□□□ -0.23
HOXD4P09016 C1QTNF1-204ENST00000392445 2833 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.23
HOXD4P09016 EIF5-202ENST00000392715 3417 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
HOXD4P09016 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
HOXD4P09016 OS9-204ENST00000389146 2091 ntTSL 2 BASIC13.64□□□□□ -0.23
HOXD4P09016 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
HOXD4P09016 TP53INP1-201ENST00000342697 5638 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
HOXD4P09016 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
HOXD4P09016 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
HOXD4P09016 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC13.64□□□□□ -0.23
HOXD4P09016 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
HOXD4P09016 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC13.64□□□□□ -0.23
HOXD4P09016 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
HOXD4P09016 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
HOXD4P09016 C3orf22-201ENST00000318225 1000 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
HOXD4P09016 CSHL1-203ENST00000346606 659 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
HOXD4P09016 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC13.64□□□□□ -0.23
HOXD4P09016 NME2-201ENST00000393183 568 ntTSL 2 BASIC13.64□□□□□ -0.23
HOXD4P09016 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC13.64□□□□□ -0.23
HOXD4P09016 PFN2-215ENST00000497148 743 ntTSL 4 BASIC13.64□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms