Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 MRPL51-202ENST00000537701 601 ntTSL 2 BASIC14.55□□□□□ -0.08
TNFP01375 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC14.55□□□□□ -0.08
TNFP01375 SYT17-208ENST00000568433 812 ntTSL 3 BASIC14.55□□□□□ -0.08
TNFP01375 ZSCAN32-210ENST00000573830 668 ntTSL 3 BASIC14.55□□□□□ -0.08
TNFP01375 SMARCE1-213ENST00000578044 1184 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
TNFP01375 SMARCE1-216ENST00000580419 1228 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
TNFP01375 FXYD6-217ENST00000584394 669 ntTSL 3 BASIC14.55□□□□□ -0.08
TNFP01375 KLK3-207ENST00000595952 969 ntTSL 3 BASIC14.55□□□□□ -0.08
TNFP01375 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
TNFP01375 AC090164.2-201ENST00000611487 516 ntBASIC14.55□□□□□ -0.08
TNFP01375 AC100757.4-201ENST00000626934 759 ntBASIC14.55□□□□□ -0.08
TNFP01375 MBD3L2B-202ENST00000637800 774 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
TNFP01375 AC068587.8-201ENST00000641239 219 ntBASIC14.55□□□□□ -0.08
TNFP01375 AL008718.2-201ENST00000609206 1313 ntBASIC14.55□□□□□ -0.08
TNFP01375 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC14.55□□□□□ -0.08
TNFP01375 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC14.55□□□□□ -0.08
TNFP01375 KAAG1-201ENST00000274766 1382 ntAPPRIS P1 BASIC14.55□□□□□ -0.08
TNFP01375 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC14.55□□□□□ -0.08
TNFP01375 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
TNFP01375 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
TNFP01375 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
TNFP01375 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
TNFP01375 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC14.55□□□□□ -0.08
TNFP01375 AC244394.1-201ENST00000435000 1665 ntBASIC14.55□□□□□ -0.08
TNFP01375 NDC1-201ENST00000371429 5134 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
TNFP01375 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
TNFP01375 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
TNFP01375 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC14.55□□□□□ -0.08
TNFP01375 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
TNFP01375 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC14.55□□□□□ -0.08
TNFP01375 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC14.55□□□□□ -0.08
TNFP01375 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
TNFP01375 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
TNFP01375 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
TNFP01375 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
TNFP01375 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC14.54□□□□□ -0.08
TNFP01375 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
TNFP01375 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
TNFP01375 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
TNFP01375 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
TNFP01375 AC011899.2-202ENST00000438047 4302 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
TNFP01375 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
TNFP01375 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
TNFP01375 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
TNFP01375 LHFPL4-201ENST00000287585 4880 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
TNFP01375 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC14.54□□□□□ -0.08
TNFP01375 SDCCAG3P2-201ENST00000326105 1023 ntBASIC14.54□□□□□ -0.08
TNFP01375 NFYC-202ENST00000372651 1202 ntAPPRIS P3 TSL 5 BASIC14.54□□□□□ -0.08
TNFP01375 NPPA-201ENST00000376476 728 ntTSL 3 BASIC14.54□□□□□ -0.08
TNFP01375 GTF2A2-205ENST00000396064 633 ntTSL 3 BASIC14.54□□□□□ -0.08
TNFP01375 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
TNFP01375 Z97180.1-201ENST00000445173 988 ntBASIC14.54□□□□□ -0.08
TNFP01375 CICP12-201ENST00000455801 843 ntBASIC14.54□□□□□ -0.08
TNFP01375 GTF2A2-208ENST00000484743 408 ntTSL 2 BASIC14.54□□□□□ -0.08
TNFP01375 AC022217.1-201ENST00000521069 738 ntBASIC14.54□□□□□ -0.08
TNFP01375 ERICH5-202ENST00000545282 596 ntAPPRIS ALT2 TSL 2 BASIC14.54□□□□□ -0.08
TNFP01375 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC14.54□□□□□ -0.08
TNFP01375 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
TNFP01375 AC008805.1-201ENST00000590892 364 ntBASIC14.54□□□□□ -0.08
TNFP01375 AC068790.8-201ENST00000618862 504 ntAPPRIS P1 TSL 3 BASIC14.54□□□□□ -0.08
TNFP01375 PPA1-206ENST00000625364 644 ntTSL 5 BASIC14.54□□□□□ -0.08
TNFP01375 PPP1CA-201ENST00000312989 1389 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
TNFP01375 ELAVL1-205ENST00000596459 1473 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
TNFP01375 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
TNFP01375 RBFOX2-201ENST00000262829 1538 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
TNFP01375 ACE3P-201ENST00000423435 1973 ntBASIC14.54□□□□□ -0.08
TNFP01375 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
TNFP01375 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
TNFP01375 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
TNFP01375 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
TNFP01375 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC14.54□□□□□ -0.08
TNFP01375 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC14.54□□□□□ -0.08
TNFP01375 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
TNFP01375 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
TNFP01375 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC14.54□□□□□ -0.08
TNFP01375 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
TNFP01375 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
TNFP01375 AL161772.1-201ENST00000610494 4412 ntBASIC14.54□□□□□ -0.08
TNFP01375 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
TNFP01375 HAND2-AS1-202ENST00000502896 5278 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
TNFP01375 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC14.53□□□□□ -0.08
TNFP01375 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
TNFP01375 SPAG9-222ENST00000618113 8246 ntAPPRIS ALT1 TSL 5 BASIC14.53□□□□□ -0.08
TNFP01375 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
TNFP01375 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
TNFP01375 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
TNFP01375 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
TNFP01375 RALGPS2-204ENST00000367635 5834 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
TNFP01375 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
TNFP01375 AC007292.2-201ENST00000593524 1812 ntBASIC14.53□□□□□ -0.08
TNFP01375 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC14.53□□□□□ -0.08
TNFP01375 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
TNFP01375 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC14.53□□□□□ -0.08
TNFP01375 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
TNFP01375 MGRN1-202ENST00000399577 6425 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
TNFP01375 MRPS12-201ENST00000308018 1207 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
TNFP01375 POLD4-201ENST00000312419 918 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
TNFP01375 CSH2-203ENST00000392886 920 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
TNFP01375 IP6K2-205ENST00000413298 792 ntTSL 3 BASIC14.53□□□□□ -0.08
TNFP01375 AC007731.4-201ENST00000420225 652 ntTSL 2 BASIC14.53□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms