Protein–RNA interactions for Protein: Q9UBQ0

VPS29, Vacuolar protein sorting-associated protein 29, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29Q9UBQ0 TRAPPC8-201ENST00000283351 6226 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
VPS29Q9UBQ0 TTLL13P-202ENST00000438251 2738 ntAPPRIS P5 TSL 5 BASIC14.39□□□□□ -0.11
VPS29Q9UBQ0 TTLL10-AS1-201ENST00000379317 3532 ntTSL 2 BASIC14.39□□□□□ -0.11
VPS29Q9UBQ0 KIF7-201ENST00000394412 4551 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
VPS29Q9UBQ0 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
VPS29Q9UBQ0 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC14.39□□□□□ -0.11
VPS29Q9UBQ0 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
VPS29Q9UBQ0 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
VPS29Q9UBQ0 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
VPS29Q9UBQ0 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
VPS29Q9UBQ0 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
VPS29Q9UBQ0 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC14.39□□□□□ -0.11
VPS29Q9UBQ0 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
VPS29Q9UBQ0 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
VPS29Q9UBQ0 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
VPS29Q9UBQ0 PIN1P1-201ENST00000412108 996 ntBASIC14.39□□□□□ -0.11
VPS29Q9UBQ0 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC14.39□□□□□ -0.11
VPS29Q9UBQ0 AC002472.2-201ENST00000442739 958 ntBASIC14.39□□□□□ -0.11
VPS29Q9UBQ0 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC14.39□□□□□ -0.11
VPS29Q9UBQ0 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
VPS29Q9UBQ0 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC14.39□□□□□ -0.11
VPS29Q9UBQ0 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
VPS29Q9UBQ0 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC14.39□□□□□ -0.11
VPS29Q9UBQ0 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC14.39□□□□□ -0.11
VPS29Q9UBQ0 CTBP2P3-201ENST00000585629 1255 ntBASIC14.39□□□□□ -0.11
VPS29Q9UBQ0 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC14.39□□□□□ -0.11
VPS29Q9UBQ0 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC14.39□□□□□ -0.11
VPS29Q9UBQ0 AC008494.3-201ENST00000606615 944 ntBASIC14.39□□□□□ -0.11
VPS29Q9UBQ0 CU634019.7-201ENST00000624153 1185 ntBASIC14.39□□□□□ -0.11
VPS29Q9UBQ0 FP236241.2-201ENST00000624906 1185 ntBASIC14.39□□□□□ -0.11
VPS29Q9UBQ0 RASA3-201ENST00000334062 4191 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
VPS29Q9UBQ0 MXD1-206ENST00000540449 5580 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
VPS29Q9UBQ0 DDX17-202ENST00000396821 4791 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
VPS29Q9UBQ0 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC14.39□□□□□ -0.11
VPS29Q9UBQ0 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC14.39□□□□□ -0.11
VPS29Q9UBQ0 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
VPS29Q9UBQ0 SYP-201ENST00000263233 2498 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
VPS29Q9UBQ0 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC14.39□□□□□ -0.11
VPS29Q9UBQ0 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC14.39□□□□□ -0.11
VPS29Q9UBQ0 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC14.39□□□□□ -0.11
VPS29Q9UBQ0 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
VPS29Q9UBQ0 TOX3-201ENST00000219746 3233 ntAPPRIS P4 TSL 2 BASIC14.39□□□□□ -0.11
VPS29Q9UBQ0 UNC5A-201ENST00000329542 3812 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
VPS29Q9UBQ0 ZNF74-209ENST00000611540 3714 ntAPPRIS P2 TSL 2 BASIC14.39□□□□□ -0.11
VPS29Q9UBQ0 UNQ6494-202ENST00000617436 2163 ntTSL 2 BASIC14.39□□□□□ -0.11
VPS29Q9UBQ0 ANKEF1-201ENST00000378380 5303 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
VPS29Q9UBQ0 ESRP2-202ENST00000473183 3793 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
VPS29Q9UBQ0 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
VPS29Q9UBQ0 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
VPS29Q9UBQ0 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
VPS29Q9UBQ0 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
VPS29Q9UBQ0 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
VPS29Q9UBQ0 TMCO3-202ENST00000434316 3050 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
VPS29Q9UBQ0 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC14.38□□□□□ -0.11
VPS29Q9UBQ0 ARHGAP4-203ENST00000370028 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
VPS29Q9UBQ0 PPP1R13L-202ENST00000418234 3118 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
VPS29Q9UBQ0 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
VPS29Q9UBQ0 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
VPS29Q9UBQ0 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
VPS29Q9UBQ0 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC14.38□□□□□ -0.11
VPS29Q9UBQ0 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC14.38□□□□□ -0.11
VPS29Q9UBQ0 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC14.38□□□□□ -0.11
VPS29Q9UBQ0 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
VPS29Q9UBQ0 USE1-206ENST00000595101 1776 ntTSL 2 BASIC14.38□□□□□ -0.11
VPS29Q9UBQ0 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
VPS29Q9UBQ0 FRMD5-201ENST00000402883 4091 ntTSL 5 BASIC14.38□□□□□ -0.11
VPS29Q9UBQ0 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
VPS29Q9UBQ0 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
VPS29Q9UBQ0 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC14.38□□□□□ -0.11
VPS29Q9UBQ0 AC236430.1-201ENST00000402231 743 ntBASIC14.38□□□□□ -0.11
VPS29Q9UBQ0 TLE1P1-201ENST00000422965 589 ntBASIC14.38□□□□□ -0.11
VPS29Q9UBQ0 OARD1-208ENST00000469104 704 ntTSL 2 BASIC14.38□□□□□ -0.11
VPS29Q9UBQ0 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
VPS29Q9UBQ0 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
VPS29Q9UBQ0 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
VPS29Q9UBQ0 AC140912.1-201ENST00000577171 1054 ntBASIC14.38□□□□□ -0.11
VPS29Q9UBQ0 CLUHP6-201ENST00000580789 941 ntBASIC14.38□□□□□ -0.11
VPS29Q9UBQ0 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC14.38□□□□□ -0.11
VPS29Q9UBQ0 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC14.38□□□□□ -0.11
VPS29Q9UBQ0 ATF5-205ENST00000600336 682 ntTSL 2 BASIC14.38□□□□□ -0.11
VPS29Q9UBQ0 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC14.38□□□□□ -0.11
VPS29Q9UBQ0 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC14.38□□□□□ -0.11
VPS29Q9UBQ0 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC14.38□□□□□ -0.11
VPS29Q9UBQ0 PWWP2A-201ENST00000307063 3346 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
VPS29Q9UBQ0 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
VPS29Q9UBQ0 PPP1CB-203ENST00000395366 4893 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
VPS29Q9UBQ0 SLC16A1-207ENST00000538576 4374 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
VPS29Q9UBQ0 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
VPS29Q9UBQ0 AGGF1P1-201ENST00000509500 2073 ntBASIC14.38□□□□□ -0.11
VPS29Q9UBQ0 KIAA2026-201ENST00000381461 6884 ntTSL 5 BASIC14.38□□□□□ -0.11
VPS29Q9UBQ0 HTR7-202ENST00000336152 3126 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
VPS29Q9UBQ0 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
VPS29Q9UBQ0 STARD8-202ENST00000374597 4820 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
VPS29Q9UBQ0 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
VPS29Q9UBQ0 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
VPS29Q9UBQ0 GREM1-202ENST00000560830 2648 ntTSL 2 BASIC14.38□□□□□ -0.11
VPS29Q9UBQ0 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
VPS29Q9UBQ0 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
VPS29Q9UBQ0 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
VPS29Q9UBQ0 SORCS2-201ENST00000329016 5582 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 123.8 ms