Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 GOLGA8T-202ENST00000569052 1896 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
USP54Q70EL1 IQCJ-201ENST00000397832 1460 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
USP54Q70EL1 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC19.26■□□□□ 0.67
USP54Q70EL1 AURKB-201ENST00000316199 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC19.26■□□□□ 0.67
USP54Q70EL1 SETD7-203ENST00000406354 1127 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
USP54Q70EL1 AC112721.1-201ENST00000409162 588 ntTSL 3 BASIC19.26■□□□□ 0.67
USP54Q70EL1 AL138731.1-201ENST00000452624 739 ntTSL 3 BASIC19.26■□□□□ 0.67
USP54Q70EL1 AC011603.2-203ENST00000547387 897 ntTSL 3 BASIC19.26■□□□□ 0.67
USP54Q70EL1 SNHG15-205ENST00000580458 710 ntTSL 2 BASIC19.26■□□□□ 0.67
USP54Q70EL1 DUSP22-213ENST00000605035 1231 ntTSL 2 BASIC19.26■□□□□ 0.67
USP54Q70EL1 RPL13A-213ENST00000621674 1098 ntTSL 5 BASIC19.26■□□□□ 0.67
USP54Q70EL1 CLN8-204ENST00000519254 1769 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
USP54Q70EL1 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
USP54Q70EL1 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
USP54Q70EL1 SHMT1P1-201ENST00000419974 1312 ntBASIC19.26■□□□□ 0.67
USP54Q70EL1 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
USP54Q70EL1 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC19.26■□□□□ 0.67
USP54Q70EL1 KCTD18-202ENST00000409157 2556 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
USP54Q70EL1 FAM168A-204ENST00000450446 1364 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
USP54Q70EL1 AC079328.2-201ENST00000561241 3354 ntBASIC19.26■□□□□ 0.67
USP54Q70EL1 DDX59-206ENST00000447706 2900 ntTSL 2 BASIC19.25■□□□□ 0.67
USP54Q70EL1 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
USP54Q70EL1 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC19.25■□□□□ 0.67
USP54Q70EL1 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
USP54Q70EL1 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
USP54Q70EL1 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
USP54Q70EL1 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
USP54Q70EL1 ADPRH-205ENST00000478927 1501 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
USP54Q70EL1 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
USP54Q70EL1 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
USP54Q70EL1 PPIA-201ENST00000355968 818 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
USP54Q70EL1 CSAG1-203ENST00000370291 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
USP54Q70EL1 LTF-202ENST00000417439 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
USP54Q70EL1 BCAS2P2-201ENST00000425064 674 ntBASIC19.25■□□□□ 0.67
USP54Q70EL1 DMKN-229ENST00000467637 827 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
USP54Q70EL1 RN7SL396P-201ENST00000471086 295 ntBASIC19.25■□□□□ 0.67
USP54Q70EL1 PPIA-208ENST00000489459 907 ntTSL 2 BASIC19.25■□□□□ 0.67
USP54Q70EL1 AC093826.1-201ENST00000508655 993 ntBASIC19.25■□□□□ 0.67
USP54Q70EL1 AC087269.1-202ENST00000519147 400 ntTSL 3 BASIC19.25■□□□□ 0.67
USP54Q70EL1 PMFBP1-208ENST00000537792 955 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
USP54Q70EL1 AL118522.1-201ENST00000611368 560 ntBASIC19.25■□□□□ 0.67
USP54Q70EL1 PPIA-210ENST00000620047 827 ntTSL 5 BASIC19.25■□□□□ 0.67
USP54Q70EL1 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC19.25■□□□□ 0.67
USP54Q70EL1 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
USP54Q70EL1 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
USP54Q70EL1 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC19.25■□□□□ 0.67
USP54Q70EL1 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
USP54Q70EL1 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC19.25■□□□□ 0.67
USP54Q70EL1 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
USP54Q70EL1 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
USP54Q70EL1 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
USP54Q70EL1 PPM1L-201ENST00000295839 1449 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
USP54Q70EL1 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC19.25■□□□□ 0.67
USP54Q70EL1 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
USP54Q70EL1 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC19.24■□□□□ 0.67
USP54Q70EL1 AC006987.1-201ENST00000413610 527 ntBASIC19.24■□□□□ 0.67
USP54Q70EL1 FTCDNL1-203ENST00000420922 772 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
USP54Q70EL1 AL713999.1-201ENST00000473363 753 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
USP54Q70EL1 FAM167A-AS1-202ENST00000533578 1222 ntTSL 2 BASIC19.24■□□□□ 0.67
USP54Q70EL1 EIF2B1-205ENST00000539951 848 ntTSL 5 BASIC19.24■□□□□ 0.67
USP54Q70EL1 PIGT-208ENST00000545755 1158 ntTSL 5 BASIC19.24■□□□□ 0.67
USP54Q70EL1 HERC2P11-201ENST00000562845 725 ntBASIC19.24■□□□□ 0.67
USP54Q70EL1 COX5A-205ENST00000568517 582 ntTSL 3 BASIC19.24■□□□□ 0.67
USP54Q70EL1 AC100756.2-201ENST00000569537 736 ntBASIC19.24■□□□□ 0.67
USP54Q70EL1 SRRM2-205ENST00000570971 1132 ntTSL 2 BASIC19.24■□□□□ 0.67
USP54Q70EL1 TXNDC17-208ENST00000574838 746 ntTSL 3 BASIC19.24■□□□□ 0.67
USP54Q70EL1 NT5C-204ENST00000578337 582 ntTSL 2 BASIC19.24■□□□□ 0.67
USP54Q70EL1 TMEM220-AS1-207ENST00000584714 541 ntTSL 4 BASIC19.24■□□□□ 0.67
USP54Q70EL1 ST5-261ENST00000626808 1071 ntTSL 5 BASIC19.24■□□□□ 0.67
USP54Q70EL1 TCAF2P1-201ENST00000291129 2421 ntBASIC19.24■□□□□ 0.67
USP54Q70EL1 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC19.24■□□□□ 0.67
USP54Q70EL1 SERPINB6-206ENST00000380546 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
USP54Q70EL1 FTX-216ENST00000638985 1367 ntTSL 5 BASIC19.24■□□□□ 0.67
USP54Q70EL1 AC090505.1-201ENST00000430515 1834 ntBASIC19.24■□□□□ 0.67
USP54Q70EL1 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC19.24■□□□□ 0.67
USP54Q70EL1 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
USP54Q70EL1 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC19.24■□□□□ 0.67
USP54Q70EL1 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
USP54Q70EL1 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC19.24■□□□□ 0.67
USP54Q70EL1 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
USP54Q70EL1 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC19.24■□□□□ 0.67
USP54Q70EL1 C7orf61-201ENST00000332375 1004 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
USP54Q70EL1 LCE3B-201ENST00000335633 288 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
USP54Q70EL1 AL121845.1-201ENST00000447343 464 ntTSL 2 BASIC19.24■□□□□ 0.67
USP54Q70EL1 TMEM123-208ENST00000532161 743 ntAPPRIS ALT2 TSL 3 BASIC19.24■□□□□ 0.67
USP54Q70EL1 DHPS-207ENST00000594424 1172 ntTSL 3 BASIC19.24■□□□□ 0.67
USP54Q70EL1 HELLS-212ENST00000630929 400 ntTSL 5 BASIC19.24■□□□□ 0.67
USP54Q70EL1 ING4-207ENST00000446105 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC19.23■□□□□ 0.67
USP54Q70EL1 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
USP54Q70EL1 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
USP54Q70EL1 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC19.23■□□□□ 0.67
USP54Q70EL1 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
USP54Q70EL1 CYB5D2-203ENST00000575251 1588 ntTSL 2 BASIC19.23■□□□□ 0.67
USP54Q70EL1 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC19.23■□□□□ 0.67
USP54Q70EL1 FMR1-215ENST00000616382 1648 ntTSL 5 BASIC19.23■□□□□ 0.67
USP54Q70EL1 ELP4-228ENST00000640954 1612 ntTSL 5 BASIC19.23■□□□□ 0.67
USP54Q70EL1 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC19.23■□□□□ 0.67
USP54Q70EL1 TLE3-203ENST00000451782 2356 ntAPPRIS ALT1 TSL 5 BASIC19.23■□□□□ 0.67
USP54Q70EL1 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
USP54Q70EL1 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms