Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 LINC00824-204ENST00000520766 597 ntTSL 5 BASIC17.12■□□□□ 0.33
SCN4AP35499 AC093503.1-201ENST00000593888 495 ntTSL 3 BASIC17.12■□□□□ 0.33
SCN4AP35499 ESR1-214ENST00000638569 132 ntTSL 5 BASIC17.12■□□□□ 0.33
SCN4AP35499 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SCN4AP35499 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SCN4AP35499 ACP2-212ENST00000533929 1366 ntTSL 2 BASIC17.12■□□□□ 0.33
SCN4AP35499 GMEB1-202ENST00000361872 1894 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SCN4AP35499 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
SCN4AP35499 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC17.12■□□□□ 0.33
SCN4AP35499 F10-201ENST00000375551 1509 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
SCN4AP35499 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SCN4AP35499 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC17.12■□□□□ 0.33
SCN4AP35499 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SCN4AP35499 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
SCN4AP35499 AL662844.4-201ENST00000606367 2838 ntBASIC17.12■□□□□ 0.33
SCN4AP35499 ATP5J-202ENST00000400087 826 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
SCN4AP35499 RPL15-208ENST00000435882 1063 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
SCN4AP35499 AC025171.3-201ENST00000509036 472 ntTSL 2 BASIC17.12■□□□□ 0.33
SCN4AP35499 POLR3G-207ENST00000514483 682 ntTSL 3 BASIC17.12■□□□□ 0.33
SCN4AP35499 EXTL3-AS1-203ENST00000520023 780 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
SCN4AP35499 URB1-AS1-201ENST00000534991 831 ntBASIC17.12■□□□□ 0.33
SCN4AP35499 SRP14-208ENST00000560773 468 ntTSL 3 BASIC17.12■□□□□ 0.33
SCN4AP35499 CES1P2-201ENST00000566467 1242 ntBASIC17.12■□□□□ 0.33
SCN4AP35499 PHF23-213ENST00000613632 850 ntTSL 5 BASIC17.12■□□□□ 0.33
SCN4AP35499 AC005274.1-201ENST00000623460 802 ntBASIC17.12■□□□□ 0.33
SCN4AP35499 GNG14-201ENST00000640117 210 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
SCN4AP35499 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
SCN4AP35499 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
SCN4AP35499 GNG4-202ENST00000366598 1721 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SCN4AP35499 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
SCN4AP35499 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC17.11■□□□□ 0.33
SCN4AP35499 LTF-203ENST00000426532 2494 ntTSL 2 BASIC17.11■□□□□ 0.33
SCN4AP35499 CMTM1-201ENST00000328020 981 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
SCN4AP35499 CMTM1-202ENST00000332695 624 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
SCN4AP35499 ATP5H-202ENST00000344546 553 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SCN4AP35499 NDUFB6-202ENST00000366466 761 ntTSL 2 BASIC17.11■□□□□ 0.33
SCN4AP35499 TNNT2-207ENST00000367322 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
SCN4AP35499 RPRD2-201ENST00000369067 1043 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
SCN4AP35499 CD300LG-203ENST00000377203 1060 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
SCN4AP35499 CMTM1-205ENST00000379500 1064 ntAPPRIS P4 TSL 1 (best) BASIC17.11■□□□□ 0.33
SCN4AP35499 SIX3-AS1-201ENST00000419364 844 ntTSL 2 BASIC17.11■□□□□ 0.33
SCN4AP35499 DDX39B-AS1-208ENST00000420520 516 ntTSL 3 BASIC17.11■□□□□ 0.33
SCN4AP35499 CDCA4P4-201ENST00000435216 680 ntBASIC17.11■□□□□ 0.33
SCN4AP35499 AC025186.1-201ENST00000478174 870 ntBASIC17.11■□□□□ 0.33
SCN4AP35499 LAMTOR4-209ENST00000488241 613 ntTSL 2 BASIC17.11■□□□□ 0.33
SCN4AP35499 RHOH-206ENST00000505618 1225 ntAPPRIS P1 TSL 4 BASIC17.11■□□□□ 0.33
SCN4AP35499 C11orf1-202ENST00000528125 534 ntTSL 2 BASIC17.11■□□□□ 0.33
SCN4AP35499 CMTM1-209ENST00000528324 749 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
SCN4AP35499 CMTM1-217ENST00000533666 493 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
SCN4AP35499 KRT17P4-203ENST00000579355 621 ntTSL 3 BASIC17.11■□□□□ 0.33
SCN4AP35499 AL353997.6-201ENST00000583394 621 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SCN4AP35499 AL021707.6-201ENST00000609212 491 ntBASIC17.11■□□□□ 0.33
SCN4AP35499 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC17.11■□□□□ 0.33
SCN4AP35499 AC007491.1-201ENST00000637560 1306 ntTSL 5 BASIC17.11■□□□□ 0.33
SCN4AP35499 UBE2L5P-202ENST00000635918 1513 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
SCN4AP35499 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
SCN4AP35499 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SCN4AP35499 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC17.11■□□□□ 0.33
SCN4AP35499 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC17.11■□□□□ 0.33
SCN4AP35499 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC17.11■□□□□ 0.33
SCN4AP35499 NUDT2-201ENST00000346365 960 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SCN4AP35499 RHOG-201ENST00000351018 1319 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SCN4AP35499 JPT1-202ENST00000356033 1519 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SCN4AP35499 GALP-201ENST00000357330 938 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SCN4AP35499 NUDT2-202ENST00000379155 1002 ntAPPRIS P1 TSL 3 BASIC17.1■□□□□ 0.33
SCN4AP35499 OR10N1P-201ENST00000392758 869 ntBASIC17.1■□□□□ 0.33
SCN4AP35499 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SCN4AP35499 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC17.1■□□□□ 0.33
SCN4AP35499 VAC14-AS1-201ENST00000398177 2145 ntTSL 2 BASIC17.1■□□□□ 0.33
SCN4AP35499 IFNWP2-201ENST00000431203 580 ntBASIC17.1■□□□□ 0.33
SCN4AP35499 AL121987.1-201ENST00000435580 645 ntTSL 3 BASIC17.1■□□□□ 0.33
SCN4AP35499 GALP-202ENST00000440823 889 ntTSL 5 BASIC17.1■□□□□ 0.33
SCN4AP35499 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC17.1■□□□□ 0.33
SCN4AP35499 FXYD6-208ENST00000529335 708 ntTSL 3 BASIC17.1■□□□□ 0.33
SCN4AP35499 AC062028.1-201ENST00000536743 1422 ntTSL 5 BASIC17.1■□□□□ 0.33
SCN4AP35499 AC145422.1-201ENST00000541574 544 ntTSL 3 BASIC17.1■□□□□ 0.33
SCN4AP35499 CRYM-202ENST00000543948 1400 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
SCN4AP35499 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC17.1■□□□□ 0.33
SCN4AP35499 AC139099.2-201ENST00000572343 641 ntTSL 3 BASIC17.1■□□□□ 0.33
SCN4AP35499 RN7SL556P-201ENST00000582856 298 ntBASIC17.1■□□□□ 0.33
SCN4AP35499 AL136982.5-201ENST00000605222 294 ntBASIC17.1■□□□□ 0.33
SCN4AP35499 AL591424.3-201ENST00000614278 872 ntBASIC17.1■□□□□ 0.33
SCN4AP35499 Metazoa_SRP.75-201ENST00000614439 293 ntBASIC17.1■□□□□ 0.33
SCN4AP35499 Metazoa_SRP.144-201ENST00000617007 311 ntBASIC17.1■□□□□ 0.33
SCN4AP35499 NUDT2-204ENST00000618590 825 ntAPPRIS P1 TSL 3 BASIC17.1■□□□□ 0.33
SCN4AP35499 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
SCN4AP35499 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC17.1■□□□□ 0.33
SCN4AP35499 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SCN4AP35499 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SCN4AP35499 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC17.1■□□□□ 0.33
SCN4AP35499 SRPX-205ENST00000538295 1780 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
SCN4AP35499 CIT-219ENST00000612548 1799 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SCN4AP35499 BFAR-203ENST00000562442 1414 ntTSL 2 BASIC17.1■□□□□ 0.33
SCN4AP35499 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
SCN4AP35499 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC17.1■□□□□ 0.33
SCN4AP35499 AQP7-202ENST00000377425 1068 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SCN4AP35499 NQO2-204ENST00000380454 851 ntTSL 2 BASIC17.1■□□□□ 0.33
SCN4AP35499 RPL14-203ENST00000416518 812 ntTSL 3 BASIC17.1■□□□□ 0.33
SCN4AP35499 HNRNPA1P2-207ENST00000432375 960 ntBASIC17.1■□□□□ 0.33
SCN4AP35499 PLSCR1-202ENST00000448787 996 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms