Protein–RNA interactions for Protein: Q9NP79

VTA1, Vacuolar protein sorting-associated protein VTA1 homolog, humanhuman

Predictions only

Length 307 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1Q9NP79 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC16.64■□□□□ 0.25
VTA1Q9NP79 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VTA1Q9NP79 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VTA1Q9NP79 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
VTA1Q9NP79 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VTA1Q9NP79 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
VTA1Q9NP79 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
VTA1Q9NP79 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
VTA1Q9NP79 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
VTA1Q9NP79 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VTA1Q9NP79 ASGR1-201ENST00000269299 1504 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VTA1Q9NP79 BX005266.2-201ENST00000450704 1549 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
VTA1Q9NP79 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VTA1Q9NP79 LINC00680-205ENST00000450081 1593 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
VTA1Q9NP79 CYP4F23P-201ENST00000593402 1579 ntBASIC16.64■□□□□ 0.25
VTA1Q9NP79 SNHG1-213ENST00000540725 1374 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
VTA1Q9NP79 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC16.64■□□□□ 0.25
VTA1Q9NP79 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VTA1Q9NP79 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
VTA1Q9NP79 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
VTA1Q9NP79 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VTA1Q9NP79 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC16.63■□□□□ 0.25
VTA1Q9NP79 TBC1D3J-201ENST00000620719 1426 ntBASIC16.63■□□□□ 0.25
VTA1Q9NP79 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VTA1Q9NP79 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC16.63■□□□□ 0.25
VTA1Q9NP79 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
VTA1Q9NP79 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
VTA1Q9NP79 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
VTA1Q9NP79 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
VTA1Q9NP79 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
VTA1Q9NP79 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
VTA1Q9NP79 ZCCHC17-204ENST00000546109 1705 ntTSL 2 BASIC16.63■□□□□ 0.25
VTA1Q9NP79 RPS16-202ENST00000339471 643 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
VTA1Q9NP79 CD1E-202ENST00000368155 696 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
VTA1Q9NP79 CD1E-204ENST00000368157 399 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
VTA1Q9NP79 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC16.63■□□□□ 0.25
VTA1Q9NP79 AC135178.1-201ENST00000458568 537 ntTSL 3 BASIC16.63■□□□□ 0.25
VTA1Q9NP79 PFN2-206ENST00000461930 606 ntTSL 4 BASIC16.63■□□□□ 0.25
VTA1Q9NP79 RN7SL258P-201ENST00000478664 300 ntBASIC16.63■□□□□ 0.25
VTA1Q9NP79 AC084346.1-201ENST00000520962 528 ntTSL 4 BASIC16.63■□□□□ 0.25
VTA1Q9NP79 GFER-204ENST00000567719 483 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
VTA1Q9NP79 ELOF1-202ENST00000586120 658 ntAPPRIS P1 TSL 3 BASIC16.63■□□□□ 0.25
VTA1Q9NP79 AC005779.2-201ENST00000593083 550 ntAPPRIS P1 TSL 4 BASIC16.63■□□□□ 0.25
VTA1Q9NP79 LINC00969-254ENST00000625358 962 ntTSL 5 BASIC16.63■□□□□ 0.25
VTA1Q9NP79 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
VTA1Q9NP79 PCDHGB8P-201ENST00000502926 1973 ntBASIC16.63■□□□□ 0.25
VTA1Q9NP79 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC16.63■□□□□ 0.25
VTA1Q9NP79 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
VTA1Q9NP79 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VTA1Q9NP79 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VTA1Q9NP79 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
VTA1Q9NP79 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VTA1Q9NP79 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VTA1Q9NP79 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VTA1Q9NP79 UBL7-201ENST00000361351 1360 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
VTA1Q9NP79 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC16.63■□□□□ 0.25
VTA1Q9NP79 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC16.63■□□□□ 0.25
VTA1Q9NP79 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VTA1Q9NP79 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VTA1Q9NP79 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC16.62■□□□□ 0.25
VTA1Q9NP79 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VTA1Q9NP79 SLC6A9-203ENST00000372306 1926 ntTSL 2 BASIC16.62■□□□□ 0.25
VTA1Q9NP79 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
VTA1Q9NP79 SCGN-203ENST00000612225 1402 ntTSL 5 BASIC16.62■□□□□ 0.25
VTA1Q9NP79 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
VTA1Q9NP79 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
VTA1Q9NP79 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
VTA1Q9NP79 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VTA1Q9NP79 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
VTA1Q9NP79 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC16.62■□□□□ 0.25
VTA1Q9NP79 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
VTA1Q9NP79 METTL17-221ENST00000556670 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
VTA1Q9NP79 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC16.62■□□□□ 0.25
VTA1Q9NP79 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
VTA1Q9NP79 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC16.62■□□□□ 0.25
VTA1Q9NP79 STK26-204ENST00000481105 1835 ntTSL 2 BASIC16.62■□□□□ 0.25
VTA1Q9NP79 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC16.62■□□□□ 0.25
VTA1Q9NP79 AC211486.1-201ENST00000275590 980 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
VTA1Q9NP79 NDUFB8-201ENST00000299166 671 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VTA1Q9NP79 AC026316.1-201ENST00000398900 414 ntBASIC16.62■□□□□ 0.25
VTA1Q9NP79 LBH-202ENST00000401506 485 ntTSL 3 BASIC16.62■□□□□ 0.25
VTA1Q9NP79 OSM-202ENST00000403389 1000 ntAPPRIS ALT2 TSL 3 BASIC16.62■□□□□ 0.25
VTA1Q9NP79 COPS7B-205ENST00000409295 1009 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
VTA1Q9NP79 LINC01388-201ENST00000416242 416 ntTSL 3 BASIC16.62■□□□□ 0.25
VTA1Q9NP79 LINC00431-201ENST00000440735 1189 ntTSL 5 BASIC16.62■□□□□ 0.25
VTA1Q9NP79 AHNAK-205ENST00000530124 701 ntAPPRIS ALT2 TSL 3 BASIC16.62■□□□□ 0.25
VTA1Q9NP79 MSRB3-206ENST00000535664 964 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VTA1Q9NP79 AC135983.1-201ENST00000562108 1097 ntTSL 2 BASIC16.62■□□□□ 0.25
VTA1Q9NP79 STUB1-204ENST00000564370 875 ntTSL 2 BASIC16.62■□□□□ 0.25
VTA1Q9NP79 AC079325.2-202ENST00000641031 462 ntAPPRIS ALT2 BASIC16.62■□□□□ 0.25
VTA1Q9NP79 SLC35G2-201ENST00000393079 1577 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VTA1Q9NP79 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
VTA1Q9NP79 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC16.62■□□□□ 0.25
VTA1Q9NP79 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC16.62■□□□□ 0.25
VTA1Q9NP79 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
VTA1Q9NP79 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
VTA1Q9NP79 CFAP36-201ENST00000339012 1373 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
VTA1Q9NP79 AGER-201ENST00000375055 1369 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
VTA1Q9NP79 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
VTA1Q9NP79 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 37.6 ms