Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
TRAIPQ9BWF2 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
TRAIPQ9BWF2 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC16.47■□□□□ 0.23
TRAIPQ9BWF2 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
TRAIPQ9BWF2 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
TRAIPQ9BWF2 AL136309.1-201ENST00000403917 691 ntBASIC16.47■□□□□ 0.23
TRAIPQ9BWF2 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
TRAIPQ9BWF2 KRTAP10-13P-201ENST00000412914 571 ntBASIC16.47■□□□□ 0.23
TRAIPQ9BWF2 AL391280.1-201ENST00000506969 1062 ntBASIC16.47■□□□□ 0.23
TRAIPQ9BWF2 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC16.47■□□□□ 0.23
TRAIPQ9BWF2 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
TRAIPQ9BWF2 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
TRAIPQ9BWF2 PPY2P-201ENST00000582808 702 ntBASIC16.47■□□□□ 0.23
TRAIPQ9BWF2 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
TRAIPQ9BWF2 AC011495.3-201ENST00000596472 427 ntTSL 2 BASIC16.47■□□□□ 0.23
TRAIPQ9BWF2 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
TRAIPQ9BWF2 KLK11-210ENST00000600362 759 ntTSL 3 BASIC16.47■□□□□ 0.23
TRAIPQ9BWF2 OR10B1P-201ENST00000601666 907 ntBASIC16.47■□□□□ 0.23
TRAIPQ9BWF2 DIO1-215ENST00000610607 796 ntTSL 5 BASIC16.47■□□□□ 0.23
TRAIPQ9BWF2 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
TRAIPQ9BWF2 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
TRAIPQ9BWF2 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC16.47■□□□□ 0.23
TRAIPQ9BWF2 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
TRAIPQ9BWF2 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC16.47■□□□□ 0.23
TRAIPQ9BWF2 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
TRAIPQ9BWF2 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
TRAIPQ9BWF2 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
TRAIPQ9BWF2 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC16.47■□□□□ 0.23
TRAIPQ9BWF2 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
TRAIPQ9BWF2 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
TRAIPQ9BWF2 C18orf15-201ENST00000623680 2534 ntBASIC16.47■□□□□ 0.23
TRAIPQ9BWF2 FOSL2-201ENST00000264716 6708 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
TRAIPQ9BWF2 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC16.47■□□□□ 0.23
TRAIPQ9BWF2 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC16.46■□□□□ 0.23
TRAIPQ9BWF2 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
TRAIPQ9BWF2 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
TRAIPQ9BWF2 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC16.46■□□□□ 0.23
TRAIPQ9BWF2 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
TRAIPQ9BWF2 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
TRAIPQ9BWF2 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
TRAIPQ9BWF2 AP000593.2-201ENST00000542775 1433 ntBASIC16.46■□□□□ 0.23
TRAIPQ9BWF2 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC16.46■□□□□ 0.23
TRAIPQ9BWF2 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
TRAIPQ9BWF2 C1R-202ENST00000536053 2347 ntTSL 2 BASIC16.46■□□□□ 0.23
TRAIPQ9BWF2 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
TRAIPQ9BWF2 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
TRAIPQ9BWF2 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC16.46■□□□□ 0.23
TRAIPQ9BWF2 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
TRAIPQ9BWF2 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
TRAIPQ9BWF2 OCEL1-201ENST00000215061 1133 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
TRAIPQ9BWF2 TISP43-201ENST00000409793 538 ntTSL 4 BASIC16.46■□□□□ 0.23
TRAIPQ9BWF2 BCYRN1-201ENST00000418539 200 ntBASIC16.46■□□□□ 0.23
TRAIPQ9BWF2 CALR4P-201ENST00000431943 946 ntBASIC16.46■□□□□ 0.23
TRAIPQ9BWF2 AL162742.1-201ENST00000434792 954 ntTSL 2 BASIC16.46■□□□□ 0.23
TRAIPQ9BWF2 RPL35A-205ENST00000448864 549 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
TRAIPQ9BWF2 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
TRAIPQ9BWF2 AC026495.1-203ENST00000557528 906 ntTSL 5 BASIC16.46■□□□□ 0.23
TRAIPQ9BWF2 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC16.46■□□□□ 0.23
TRAIPQ9BWF2 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC16.46■□□□□ 0.23
TRAIPQ9BWF2 KC6-205ENST00000599934 556 ntTSL 4 BASIC16.46■□□□□ 0.23
TRAIPQ9BWF2 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC16.46■□□□□ 0.23
TRAIPQ9BWF2 AC244452.3-201ENST00000636814 210 ntBASIC16.46■□□□□ 0.23
TRAIPQ9BWF2 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
TRAIPQ9BWF2 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
TRAIPQ9BWF2 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
TRAIPQ9BWF2 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC16.46■□□□□ 0.23
TRAIPQ9BWF2 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
TRAIPQ9BWF2 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC16.46■□□□□ 0.23
TRAIPQ9BWF2 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC16.46■□□□□ 0.23
TRAIPQ9BWF2 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.22
TRAIPQ9BWF2 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC16.46■□□□□ 0.22
TRAIPQ9BWF2 REXO1L5P-201ENST00000622260 2098 ntBASIC16.46■□□□□ 0.22
TRAIPQ9BWF2 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
TRAIPQ9BWF2 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.22
TRAIPQ9BWF2 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
TRAIPQ9BWF2 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC16.45■□□□□ 0.22
TRAIPQ9BWF2 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
TRAIPQ9BWF2 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
TRAIPQ9BWF2 ZNF750-202ENST00000572562 1513 ntTSL 2 BASIC16.45■□□□□ 0.22
TRAIPQ9BWF2 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
TRAIPQ9BWF2 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
TRAIPQ9BWF2 CA10-203ENST00000451037 3189 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
TRAIPQ9BWF2 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
TRAIPQ9BWF2 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
TRAIPQ9BWF2 EIF4EBP3-201ENST00000310331 691 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
TRAIPQ9BWF2 HIST1H2AD-201ENST00000341023 393 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
TRAIPQ9BWF2 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
TRAIPQ9BWF2 AL022323.1-201ENST00000366110 957 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
TRAIPQ9BWF2 LIMS4-201ENST00000413601 1215 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
TRAIPQ9BWF2 ALG1L2-201ENST00000425059 969 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
TRAIPQ9BWF2 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC16.45■□□□□ 0.22
TRAIPQ9BWF2 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC16.45■□□□□ 0.22
TRAIPQ9BWF2 PTPA-218ENST00000435132 618 ntTSL 2 BASIC16.45■□□□□ 0.22
TRAIPQ9BWF2 ATP6V0CP2-201ENST00000469409 207 ntBASIC16.45■□□□□ 0.22
TRAIPQ9BWF2 ARTN-209ENST00000479128 471 ntTSL 3 BASIC16.45■□□□□ 0.22
TRAIPQ9BWF2 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
TRAIPQ9BWF2 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
TRAIPQ9BWF2 AC092634.5-202ENST00000587736 928 ntTSL 2 BASIC16.45■□□□□ 0.22
TRAIPQ9BWF2 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC16.45■□□□□ 0.22
TRAIPQ9BWF2 PRRC2B-210ENST00000638390 1084 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 82.5 ms