Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
BRCA1P38398 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
BRCA1P38398 SVOPL-203ENST00000421622 1653 ntTSL 5 BASIC17.6■□□□□ 0.41
BRCA1P38398 CD59-201ENST00000351554 1775 ntAPPRIS P2 TSL 2 BASIC17.6■□□□□ 0.41
BRCA1P38398 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC17.6■□□□□ 0.41
BRCA1P38398 AC023024.2-201ENST00000623561 1993 ntBASIC17.6■□□□□ 0.41
BRCA1P38398 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
BRCA1P38398 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
BRCA1P38398 AC138761.6-201ENST00000583997 1423 ntBASIC17.6■□□□□ 0.41
BRCA1P38398 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
BRCA1P38398 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
BRCA1P38398 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
BRCA1P38398 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
BRCA1P38398 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC17.6■□□□□ 0.41
BRCA1P38398 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
BRCA1P38398 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
BRCA1P38398 L2HGDH-201ENST00000261699 1377 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
BRCA1P38398 TNNT2-207ENST00000367322 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
BRCA1P38398 IGLV9-49-201ENST00000427632 409 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
BRCA1P38398 FOXP4-AS1-205ENST00000454812 575 ntTSL 2 BASIC17.6■□□□□ 0.41
BRCA1P38398 IGKV1OR-2-201ENST00000457995 350 ntBASIC17.6■□□□□ 0.41
BRCA1P38398 AC015795.2-201ENST00000512720 575 ntTSL 3 BASIC17.6■□□□□ 0.41
BRCA1P38398 GPX3-202ENST00000517973 612 ntTSL 3 BASIC17.6■□□□□ 0.41
BRCA1P38398 C12orf57-204ENST00000540506 551 ntTSL 2 BASIC17.6■□□□□ 0.41
BRCA1P38398 AC007376.2-201ENST00000556271 540 ntTSL 3 BASIC17.6■□□□□ 0.41
BRCA1P38398 AC007193.3-201ENST00000598616 188 ntTSL 3 BASIC17.6■□□□□ 0.41
BRCA1P38398 AL021707.6-201ENST00000609212 491 ntBASIC17.6■□□□□ 0.41
BRCA1P38398 GNG14-201ENST00000640117 210 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
BRCA1P38398 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
BRCA1P38398 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC17.6■□□□□ 0.41
BRCA1P38398 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
BRCA1P38398 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
BRCA1P38398 VAC14-AS1-201ENST00000398177 2145 ntTSL 2 BASIC17.6■□□□□ 0.41
BRCA1P38398 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
BRCA1P38398 AC106707.1-201ENST00000475981 1640 ntTSL 2 BASIC17.6■□□□□ 0.41
BRCA1P38398 AC109466.1-209ENST00000486913 1618 ntTSL 2 BASIC17.6■□□□□ 0.41
BRCA1P38398 C1orf87-202ENST00000450089 1307 ntTSL 5 BASIC17.6■□□□□ 0.41
BRCA1P38398 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
BRCA1P38398 KCTD6-205ENST00000490264 1759 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
BRCA1P38398 WT1-209ENST00000530998 2421 ntTSL 2 BASIC17.59■□□□□ 0.41
BRCA1P38398 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
BRCA1P38398 NBPF3-205ENST00000454000 2133 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
BRCA1P38398 B3GNTL1-201ENST00000320865 1383 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
BRCA1P38398 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC17.59■□□□□ 0.41
BRCA1P38398 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
BRCA1P38398 SAT1-201ENST00000379251 801 ntTSL 2 BASIC17.59■□□□□ 0.41
BRCA1P38398 SAT1-202ENST00000379253 909 ntTSL 2 BASIC17.59■□□□□ 0.41
BRCA1P38398 SAT1-203ENST00000379254 868 ntTSL 3 BASIC17.59■□□□□ 0.41
BRCA1P38398 SAT1-204ENST00000379270 1065 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
BRCA1P38398 PPM1N-203ENST00000396737 872 ntTSL 2 BASIC17.59■□□□□ 0.41
BRCA1P38398 AC005740.1-201ENST00000515639 522 ntBASIC17.59■□□□□ 0.41
BRCA1P38398 AC090152.1-203ENST00000517898 1106 ntTSL 2 BASIC17.59■□□□□ 0.41
BRCA1P38398 LINC00824-204ENST00000520766 597 ntTSL 5 BASIC17.59■□□□□ 0.41
BRCA1P38398 TRAPPC2L-212ENST00000567312 499 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
BRCA1P38398 KRT17P4-203ENST00000579355 621 ntTSL 3 BASIC17.59■□□□□ 0.41
BRCA1P38398 AL353997.6-201ENST00000583394 621 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
BRCA1P38398 HPX-213ENST00000615166 826 ntTSL 5 BASIC17.59■□□□□ 0.41
BRCA1P38398 ODCP-201ENST00000459650 1639 ntBASIC17.59■□□□□ 0.41
BRCA1P38398 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC17.59■□□□□ 0.41
BRCA1P38398 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
BRCA1P38398 GABRB2-205ENST00000517901 1779 ntTSL 5 BASIC17.59■□□□□ 0.41
BRCA1P38398 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
BRCA1P38398 CST9-201ENST00000376971 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
BRCA1P38398 DKFZP434H168-201ENST00000567381 1905 ntBASIC17.59■□□□□ 0.41
BRCA1P38398 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC17.59■□□□□ 0.41
BRCA1P38398 GOT2-202ENST00000434819 1615 ntTSL 2 BASIC17.59■□□□□ 0.41
BRCA1P38398 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
BRCA1P38398 AC006987.1-201ENST00000413610 527 ntBASIC17.58■□□□□ 0.41
BRCA1P38398 AC073210.1-201ENST00000414799 232 ntBASIC17.58■□□□□ 0.41
BRCA1P38398 BX248123.1-201ENST00000429070 606 ntTSL 3 BASIC17.58■□□□□ 0.41
BRCA1P38398 PILRA-205ENST00000453419 1043 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
BRCA1P38398 AC008443.1-202ENST00000506340 687 ntTSL 2 BASIC17.58■□□□□ 0.41
BRCA1P38398 AC025171.3-201ENST00000509036 472 ntTSL 2 BASIC17.58■□□□□ 0.41
BRCA1P38398 PAX5-210ENST00000520281 969 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
BRCA1P38398 CR383656.13-201ENST00000550928 563 ntTSL 3 BASIC17.58■□□□□ 0.41
BRCA1P38398 AL512310.10-201ENST00000555580 563 ntTSL 3 BASIC17.58■□□□□ 0.41
BRCA1P38398 PFDN5-220ENST00000628881 231 ntTSL 3 BASIC17.58■□□□□ 0.41
BRCA1P38398 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.41
BRCA1P38398 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
BRCA1P38398 BFAR-203ENST00000562442 1414 ntTSL 2 BASIC17.58■□□□□ 0.41
BRCA1P38398 AL358216.1-201ENST00000451601 1657 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
BRCA1P38398 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
BRCA1P38398 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.41
BRCA1P38398 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
BRCA1P38398 AC092850.2-201ENST00000623821 2697 ntBASIC17.58■□□□□ 0.41
BRCA1P38398 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC17.58■□□□□ 0.41
BRCA1P38398 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC17.58■□□□□ 0.41
BRCA1P38398 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC17.58■□□□□ 0.41
BRCA1P38398 COLQ-202ENST00000383786 1482 ntTSL 5 BASIC17.58■□□□□ 0.4
BRCA1P38398 GMEB1-202ENST00000361872 1894 ntAPPRIS ALT1 TSL 1 (best) BASIC17.58■□□□□ 0.4
BRCA1P38398 C7orf72-201ENST00000297001 2028 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
BRCA1P38398 TTC39A-216ENST00000530004 1780 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
BRCA1P38398 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC17.58■□□□□ 0.4
BRCA1P38398 ATP5H-202ENST00000344546 553 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
BRCA1P38398 HIST1H2BK-201ENST00000356950 381 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
BRCA1P38398 LINC01656-201ENST00000415702 630 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
BRCA1P38398 LRRC3-AS1-201ENST00000426578 784 ntTSL 3 BASIC17.58■□□□□ 0.4
BRCA1P38398 CU639417.1-201ENST00000464664 460 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
BRCA1P38398 HOXC-AS3-203ENST00000514702 368 ntTSL 3 BASIC17.58■□□□□ 0.4
BRCA1P38398 AC139099.2-201ENST00000572343 641 ntTSL 3 BASIC17.58■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 70.7 ms