Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC14.41□□□□□ -0.1
MSX2P35548 CAND2-201ENST00000295989 4429 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
MSX2P35548 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
MSX2P35548 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
MSX2P35548 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
MSX2P35548 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC14.41□□□□□ -0.1
MSX2P35548 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
MSX2P35548 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC14.41□□□□□ -0.1
MSX2P35548 NUTM2HP-201ENST00000442076 2498 ntBASIC14.41□□□□□ -0.1
MSX2P35548 HSD17B4-215ENST00000510025 2589 ntTSL 2 BASIC14.41□□□□□ -0.1
MSX2P35548 CILP2-201ENST00000291495 4199 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
MSX2P35548 CACNA1I-203ENST00000404898 9892 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
MSX2P35548 ELP1-201ENST00000374647 5905 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
MSX2P35548 SCNN1A-215ENST00000540037 3040 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
MSX2P35548 SSTR2-201ENST00000357585 7683 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
MSX2P35548 PIK3CG-201ENST00000359195 5377 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
MSX2P35548 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
MSX2P35548 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC14.41□□□□□ -0.1
MSX2P35548 STXBP1-201ENST00000373299 3765 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
MSX2P35548 CAP2-209ENST00000616440 2776 ntTSL 2 BASIC14.4□□□□□ -0.1
MSX2P35548 RUNX3-203ENST00000399916 4340 ntAPPRIS ALT2 TSL 2 BASIC14.4□□□□□ -0.1
MSX2P35548 NR4A1-202ENST00000360284 2589 ntTSL 2 BASIC14.4□□□□□ -0.1
MSX2P35548 API5-203ENST00000455725 2257 ntTSL 2 BASIC14.4□□□□□ -0.1
MSX2P35548 CD99L2-208ENST00000613030 3742 ntAPPRIS ALT2 TSL 2 BASIC14.4□□□□□ -0.1
MSX2P35548 PPM1A-203ENST00000395076 8184 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
MSX2P35548 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
MSX2P35548 AGGF1P1-201ENST00000509500 2073 ntBASIC14.4□□□□□ -0.1
MSX2P35548 TSN-212ENST00000536142 3328 ntTSL 2 BASIC14.4□□□□□ -0.1
MSX2P35548 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
MSX2P35548 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
MSX2P35548 SEMA7A-202ENST00000542748 3228 ntTSL 5 BASIC14.4□□□□□ -0.1
MSX2P35548 WSCD2-206ENST00000547525 4481 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
MSX2P35548 AL359075.1-201ENST00000476232 2921 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
MSX2P35548 RIOK1-202ENST00000379834 2810 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
MSX2P35548 SLC29A4-203ENST00000406453 2734 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
MSX2P35548 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC14.4□□□□□ -0.1
MSX2P35548 MVK-214ENST00000629016 1591 ntTSL 5 BASIC14.4□□□□□ -0.1
MSX2P35548 CDHR5-203ENST00000397542 3489 ntAPPRIS P4 TSL 1 (best) BASIC14.4□□□□□ -0.1
MSX2P35548 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
MSX2P35548 XG-201ENST00000381174 2315 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
MSX2P35548 TMEM63B-202ENST00000323267 3198 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
MSX2P35548 AC025594.2-201ENST00000609480 3902 ntAPPRIS P1 TSL 3 BASIC14.4□□□□□ -0.1
MSX2P35548 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
MSX2P35548 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
MSX2P35548 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC14.4□□□□□ -0.1
MSX2P35548 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC14.4□□□□□ -0.1
MSX2P35548 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC14.4□□□□□ -0.1
MSX2P35548 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC14.4□□□□□ -0.1
MSX2P35548 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
MSX2P35548 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC14.4□□□□□ -0.1
MSX2P35548 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC14.4□□□□□ -0.1
MSX2P35548 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
MSX2P35548 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC14.4□□□□□ -0.1
MSX2P35548 DKKL1-202ENST00000594268 524 ntAPPRIS ALT2 TSL 2 BASIC14.4□□□□□ -0.1
MSX2P35548 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC14.4□□□□□ -0.1
MSX2P35548 AL645728.2-202ENST00000641679 227 ntBASIC14.4□□□□□ -0.1
MSX2P35548 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC14.4□□□□□ -0.1
MSX2P35548 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
MSX2P35548 PAPD7-207ENST00000631941 1902 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
MSX2P35548 AC239799.1-201ENST00000612520 3411 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
MSX2P35548 AC090505.1-201ENST00000430515 1834 ntBASIC14.4□□□□□ -0.1
MSX2P35548 APOB-202ENST00000399256 3128 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
MSX2P35548 TCOF1-202ENST00000377797 5095 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
MSX2P35548 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
MSX2P35548 GRM7-215ENST00000486284 4241 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
MSX2P35548 NFATC1-205ENST00000427363 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
MSX2P35548 MCM9-202ENST00000316316 5101 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
MSX2P35548 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
MSX2P35548 E2F7-202ENST00000416496 5297 ntTSL 5 BASIC14.4□□□□□ -0.1
MSX2P35548 AL365181.3-201ENST00000605886 3222 ntBASIC14.39□□□□□ -0.11
MSX2P35548 CRELD1-202ENST00000383811 2696 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
MSX2P35548 NT5C3A-213ENST00000610140 1670 ntAPPRIS ALT1 TSL 1 (best) BASIC14.39□□□□□ -0.11
MSX2P35548 RAVER1-206ENST00000611074 3586 ntAPPRIS P2 TSL 5 BASIC14.39□□□□□ -0.11
MSX2P35548 IL17RD-201ENST00000296318 8720 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
MSX2P35548 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
MSX2P35548 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
MSX2P35548 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
MSX2P35548 HYOU1-218ENST00000614668 1569 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
MSX2P35548 MEF2D-201ENST00000348159 5965 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
MSX2P35548 COL1A2-201ENST00000297268 5411 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
MSX2P35548 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC14.39□□□□□ -0.11
MSX2P35548 DSTN-201ENST00000246069 3617 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
MSX2P35548 PTPRO-201ENST00000281171 5301 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
MSX2P35548 AC012349.1-201ENST00000518662 2643 ntTSL 2 BASIC14.39□□□□□ -0.11
MSX2P35548 COL6A1-201ENST00000361866 4238 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
MSX2P35548 AC018665.1-201ENST00000622927 1362 ntBASIC14.39□□□□□ -0.11
MSX2P35548 ATG9A-204ENST00000409422 2512 ntTSL 5 BASIC14.39□□□□□ -0.11
MSX2P35548 ACADM-218ENST00000541113 2535 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
MSX2P35548 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC14.39□□□□□ -0.11
MSX2P35548 C15orf41-208ENST00000566621 2866 ntAPPRIS P3 TSL 5 BASIC14.39□□□□□ -0.11
MSX2P35548 SSTR5-AS1-204ENST00000569832 2864 ntTSL 2 BASIC14.39□□□□□ -0.11
MSX2P35548 PBX3-201ENST00000342287 2755 ntAPPRIS ALT1 TSL 5 BASIC14.39□□□□□ -0.11
MSX2P35548 SCD5-202ENST00000319540 3101 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
MSX2P35548 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
MSX2P35548 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC14.39□□□□□ -0.11
MSX2P35548 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC14.39□□□□□ -0.11
MSX2P35548 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
MSX2P35548 AL133267.1-201ENST00000398220 340 ntBASIC14.39□□□□□ -0.11
MSX2P35548 AL353705.2-201ENST00000428243 662 ntBASIC14.39□□□□□ -0.11
MSX2P35548 AL592309.1-201ENST00000443127 649 ntBASIC14.39□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 46.4 ms