Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 PES1-204ENST00000402284 2144 ntTSL 5 BASIC24.92■■□□□ 1.58
CUX2O14529 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC24.92■■□□□ 1.58
CUX2O14529 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC24.92■■□□□ 1.58
CUX2O14529 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC24.92■■□□□ 1.58
CUX2O14529 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC24.91■■□□□ 1.58
CUX2O14529 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
CUX2O14529 HTATIP2-202ENST00000421577 886 ntAPPRIS P1 TSL 2 BASIC24.91■■□□□ 1.58
CUX2O14529 AC114488.1-201ENST00000435872 591 ntTSL 3 BASIC24.91■■□□□ 1.58
CUX2O14529 AC022113.2-201ENST00000504935 704 ntTSL 3 BASIC24.91■■□□□ 1.58
CUX2O14529 AC005786.2-201ENST00000592368 369 ntTSL 3 BASIC24.91■■□□□ 1.58
CUX2O14529 AC006207.1-201ENST00000637958 562 ntTSL 5 BASIC24.91■■□□□ 1.58
CUX2O14529 PLSCR1-214ENST00000487389 1443 ntAPPRIS ALT2 TSL 5 BASIC24.91■■□□□ 1.58
CUX2O14529 HTR3D-201ENST00000334128 1459 ntTSL 1 (best) BASIC24.91■■□□□ 1.58
CUX2O14529 AC003102.2-201ENST00000589195 1469 ntBASIC24.91■■□□□ 1.58
CUX2O14529 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC24.91■■□□□ 1.58
CUX2O14529 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC24.91■■□□□ 1.58
CUX2O14529 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC24.91■■□□□ 1.58
CUX2O14529 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC24.91■■□□□ 1.58
CUX2O14529 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
CUX2O14529 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC24.91■■□□□ 1.58
CUX2O14529 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC24.91■■□□□ 1.58
CUX2O14529 EZH2-202ENST00000350995 2477 ntAPPRIS ALT1 TSL 1 (best) BASIC24.91■■□□□ 1.58
CUX2O14529 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC24.91■■□□□ 1.58
CUX2O14529 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC24.91■■□□□ 1.58
CUX2O14529 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC24.91■■□□□ 1.58
CUX2O14529 STK33-217ENST00000534493 1895 ntTSL 2 BASIC24.9■■□□□ 1.58
CUX2O14529 LINC00665-206ENST00000590622 1749 ntTSL 1 (best) BASIC24.9■■□□□ 1.58
CUX2O14529 Metazoa_SRP.6-201ENST00000366384 298 ntBASIC24.9■■□□□ 1.58
CUX2O14529 AL080243.1-201ENST00000423293 1060 ntBASIC24.9■■□□□ 1.58
CUX2O14529 ASS1P2-201ENST00000439895 1223 ntBASIC24.9■■□□□ 1.58
CUX2O14529 TSTD1-206ENST00000466967 477 ntTSL 2 BASIC24.9■■□□□ 1.58
CUX2O14529 ZFP1-207ENST00000567481 493 ntTSL 4 BASIC24.9■■□□□ 1.58
CUX2O14529 KCNQ1OT1_1.1-201ENST00000622358 464 ntBASIC24.9■■□□□ 1.58
CUX2O14529 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC24.9■■□□□ 1.58
CUX2O14529 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
CUX2O14529 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
CUX2O14529 MS4A15-201ENST00000337911 1536 ntTSL 1 (best) BASIC24.9■■□□□ 1.58
CUX2O14529 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC24.9■■□□□ 1.58
CUX2O14529 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC24.9■■□□□ 1.58
CUX2O14529 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC24.9■■□□□ 1.58
CUX2O14529 TMEM216-202ENST00000398979 908 ntTSL 1 (best) BASIC24.89■■□□□ 1.58
CUX2O14529 LINC01502-203ENST00000447907 880 ntTSL 3 BASIC24.89■■□□□ 1.58
CUX2O14529 PEBP1P3-201ENST00000455475 548 ntBASIC24.89■■□□□ 1.58
CUX2O14529 AC011676.3-201ENST00000520606 294 ntTSL 5 BASIC24.89■■□□□ 1.58
CUX2O14529 AC037486.1-201ENST00000523792 790 ntTSL 1 (best) BASIC24.89■■□□□ 1.58
CUX2O14529 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC24.89■■□□□ 1.58
CUX2O14529 AC079414.2-201ENST00000567157 1104 ntBASIC24.89■■□□□ 1.58
CUX2O14529 AC022966.2-201ENST00000587434 367 ntBASIC24.89■■□□□ 1.58
CUX2O14529 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC24.89■■□□□ 1.58
CUX2O14529 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC24.89■■□□□ 1.58
CUX2O14529 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
CUX2O14529 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC24.89■■□□□ 1.58
CUX2O14529 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
CUX2O14529 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.57
CUX2O14529 VDAC2-202ENST00000313132 1467 ntTSL 1 (best) BASIC24.89■■□□□ 1.57
CUX2O14529 RPL13-204ENST00000452368 1455 ntTSL 2 BASIC24.89■■□□□ 1.57
CUX2O14529 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC24.89■■□□□ 1.57
CUX2O14529 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC24.89■■□□□ 1.57
CUX2O14529 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC24.89■■□□□ 1.57
CUX2O14529 CICP11-201ENST00000434745 2827 ntBASIC24.89■■□□□ 1.57
CUX2O14529 AIF1L-205ENST00000372301 671 ntTSL 2 BASIC24.89■■□□□ 1.57
CUX2O14529 AL773545.2-201ENST00000442149 472 ntBASIC24.89■■□□□ 1.57
CUX2O14529 CDK4P1-201ENST00000454213 828 ntBASIC24.89■■□□□ 1.57
CUX2O14529 AC002996.1-201ENST00000546840 784 ntAPPRIS P1 TSL 5 BASIC24.89■■□□□ 1.57
CUX2O14529 TPST2P1-201ENST00000564073 1102 ntBASIC24.89■■□□□ 1.57
CUX2O14529 IGHV3OR16-12-201ENST00000570121 353 ntAPPRIS P1 BASIC24.89■■□□□ 1.57
CUX2O14529 AC023421.2-201ENST00000589510 313 ntTSL 5 BASIC24.89■■□□□ 1.57
CUX2O14529 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.57
CUX2O14529 AADAT-206ENST00000509167 2113 ntAPPRIS ALT1 TSL 1 (best) BASIC24.88■■□□□ 1.57
CUX2O14529 AL050341.2-201ENST00000567508 1541 ntBASIC24.88■■□□□ 1.57
CUX2O14529 WAC-202ENST00000347934 2839 ntTSL 5 BASIC24.88■■□□□ 1.57
CUX2O14529 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC24.88■■□□□ 1.57
CUX2O14529 CT55-201ENST00000276241 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC24.88■■□□□ 1.57
CUX2O14529 CCNH-201ENST00000256897 1378 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
CUX2O14529 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC24.88■■□□□ 1.57
CUX2O14529 HFE-201ENST00000309234 1158 ntAPPRIS ALT2 TSL 2 BASIC24.88■■□□□ 1.57
CUX2O14529 AL137244.1-201ENST00000422931 865 ntBASIC24.88■■□□□ 1.57
CUX2O14529 CSAG1-204ENST00000452779 627 ntAPPRIS P2 TSL 1 (best) BASIC24.88■■□□□ 1.57
CUX2O14529 IGKV1OR2-108-201ENST00000453673 353 ntAPPRIS P1 BASIC24.88■■□□□ 1.57
CUX2O14529 AL355376.1-201ENST00000456082 517 ntTSL 3 BASIC24.88■■□□□ 1.57
CUX2O14529 RN7SL578P-201ENST00000477781 283 ntBASIC24.88■■□□□ 1.57
CUX2O14529 RN7SL564P-201ENST00000496309 250 ntBASIC24.88■■□□□ 1.57
CUX2O14529 ISL1-203ENST00000511384 981 ntTSL 5 BASIC24.88■■□□□ 1.57
CUX2O14529 AC003686.1-201ENST00000550956 1034 ntBASIC24.88■■□□□ 1.57
CUX2O14529 CHD2-218ENST00000629346 1249 ntTSL 5 BASIC24.88■■□□□ 1.57
CUX2O14529 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
CUX2O14529 LINC00339-208ENST00000634934 1518 ntTSL 5 BASIC24.88■■□□□ 1.57
CUX2O14529 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC24.88■■□□□ 1.57
CUX2O14529 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC24.88■■□□□ 1.57
CUX2O14529 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC24.87■■□□□ 1.57
CUX2O14529 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC24.87■■□□□ 1.57
CUX2O14529 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC24.87■■□□□ 1.57
CUX2O14529 PTGR1-205ENST00000407693 1407 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
CUX2O14529 AC010491.1-201ENST00000563101 2797 ntBASIC24.87■■□□□ 1.57
CUX2O14529 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC24.87■■□□□ 1.57
CUX2O14529 TMEM9-203ENST00000367333 1564 ntAPPRIS P3 TSL 1 (best) BASIC24.87■■□□□ 1.57
CUX2O14529 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
CUX2O14529 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC24.87■■□□□ 1.57
CUX2O14529 LINC00303-203ENST00000427799 1028 ntTSL 1 (best) BASIC24.87■■□□□ 1.57
CUX2O14529 AL035414.1-201ENST00000451327 857 ntBASIC24.87■■□□□ 1.57
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms