Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 RNA5SP359-201ENST00000364838 113 ntBASIC14.78□□□□□ -0.04
CXCL12P48061 PRTFDC1-202ENST00000376376 741 ntTSL 2 BASIC14.78□□□□□ -0.04
CXCL12P48061 C1QA-202ENST00000402322 976 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CXCL12P48061 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC14.78□□□□□ -0.04
CXCL12P48061 FTH1P22-201ENST00000456305 520 ntBASIC14.78□□□□□ -0.04
CXCL12P48061 AC233724.6-201ENST00000503184 1088 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
CXCL12P48061 REEP5-205ENST00000504247 480 ntTSL 5 BASIC14.78□□□□□ -0.04
CXCL12P48061 GCOM2-201ENST00000509133 1104 ntBASIC14.78□□□□□ -0.04
CXCL12P48061 REEP5-207ENST00000513339 1139 ntTSL 2 BASIC14.78□□□□□ -0.04
CXCL12P48061 ALG1L6P-201ENST00000515248 758 ntBASIC14.78□□□□□ -0.04
CXCL12P48061 POLD4-208ENST00000532830 904 ntTSL 3 BASIC14.78□□□□□ -0.04
CXCL12P48061 NAA40-206ENST00000542163 1035 ntTSL 2 BASIC14.78□□□□□ -0.04
CXCL12P48061 JMJD8-203ENST00000562824 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
CXCL12P48061 DCTPP1-202ENST00000565758 749 ntTSL 3 BASIC14.78□□□□□ -0.04
CXCL12P48061 MIR3180-2-201ENST00000581748 88 ntBASIC14.78□□□□□ -0.04
CXCL12P48061 RN7SL470P-201ENST00000583069 259 ntBASIC14.78□□□□□ -0.04
CXCL12P48061 AC025262.2-201ENST00000623975 1056 ntBASIC14.78□□□□□ -0.04
CXCL12P48061 AC005618.3-201ENST00000624928 458 ntBASIC14.78□□□□□ -0.04
CXCL12P48061 ADH5-213ENST00000626055 1299 ntTSL 5 BASIC14.78□□□□□ -0.04
CXCL12P48061 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CXCL12P48061 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CXCL12P48061 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CXCL12P48061 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC14.78□□□□□ -0.04
CXCL12P48061 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC14.78□□□□□ -0.04
CXCL12P48061 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC14.78□□□□□ -0.04
CXCL12P48061 ALAS2-202ENST00000335854 1795 ntTSL 2 BASIC14.78□□□□□ -0.04
CXCL12P48061 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CXCL12P48061 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC14.78□□□□□ -0.04
CXCL12P48061 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC14.77□□□□□ -0.04
CXCL12P48061 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
CXCL12P48061 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC14.77□□□□□ -0.04
CXCL12P48061 TMEM144-209ENST00000509278 1633 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
CXCL12P48061 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC14.77□□□□□ -0.04
CXCL12P48061 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
CXCL12P48061 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.04
CXCL12P48061 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.04
CXCL12P48061 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
CXCL12P48061 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
CXCL12P48061 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
CXCL12P48061 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC14.77□□□□□ -0.04
CXCL12P48061 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC14.77□□□□□ -0.04
CXCL12P48061 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC14.77□□□□□ -0.04
CXCL12P48061 TOMM22-201ENST00000216034 2040 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
CXCL12P48061 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
CXCL12P48061 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
CXCL12P48061 AHCYP4-201ENST00000419201 1315 ntBASIC14.77□□□□□ -0.04
CXCL12P48061 PRAL-201ENST00000624952 3286 ntBASIC14.77□□□□□ -0.04
CXCL12P48061 AURKB-201ENST00000316199 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC14.77□□□□□ -0.05
CXCL12P48061 PRIMA1-201ENST00000316227 1080 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
CXCL12P48061 Metazoa_SRP.6-201ENST00000366384 298 ntBASIC14.77□□□□□ -0.05
CXCL12P48061 ZFAND2B-205ENST00000409319 771 ntTSL 2 BASIC14.77□□□□□ -0.05
CXCL12P48061 AL157788.1-201ENST00000437838 229 ntTSL 3 BASIC14.77□□□□□ -0.05
CXCL12P48061 AL139420.2-201ENST00000449439 410 ntTSL 3 BASIC14.77□□□□□ -0.05
CXCL12P48061 NCK1-AS1-203ENST00000474250 827 ntTSL 2 BASIC14.77□□□□□ -0.05
CXCL12P48061 NSD1-211ENST00000511258 809 ntTSL 3 BASIC14.77□□□□□ -0.05
CXCL12P48061 RPS25-202ENST00000527673 835 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
CXCL12P48061 POLD4-206ENST00000530584 899 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
CXCL12P48061 SDHAF2-206ENST00000542074 835 ntTSL 2 BASIC14.77□□□□□ -0.05
CXCL12P48061 AC025154.2-201ENST00000550530 445 ntTSL 3 BASIC14.77□□□□□ -0.05
CXCL12P48061 AC068397.2-201ENST00000558742 341 ntTSL 5 BASIC14.77□□□□□ -0.05
CXCL12P48061 C2orf69P1-201ENST00000563532 1093 ntBASIC14.77□□□□□ -0.05
CXCL12P48061 AC024361.2-201ENST00000574471 898 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
CXCL12P48061 TMEM205-210ENST00000588560 840 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.05
CXCL12P48061 BCL2L12-204ENST00000594157 620 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
CXCL12P48061 FO393412.1-201ENST00000619841 382 ntBASIC14.77□□□□□ -0.05
CXCL12P48061 AC079325.2-202ENST00000641031 462 ntAPPRIS ALT2 BASIC14.77□□□□□ -0.05
CXCL12P48061 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
CXCL12P48061 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC14.77□□□□□ -0.05
CXCL12P48061 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.05
CXCL12P48061 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
CXCL12P48061 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
CXCL12P48061 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
CXCL12P48061 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
CXCL12P48061 GRM5-205ENST00000455756 7927 ntAPPRIS P3 TSL 2 BASIC14.77□□□□□ -0.05
CXCL12P48061 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
CXCL12P48061 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC14.77□□□□□ -0.05
CXCL12P48061 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.05
CXCL12P48061 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
CXCL12P48061 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC14.77□□□□□ -0.05
CXCL12P48061 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CXCL12P48061 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC14.76□□□□□ -0.05
CXCL12P48061 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CXCL12P48061 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CXCL12P48061 AC090502.4-201ENST00000551714 1386 ntBASIC14.76□□□□□ -0.05
CXCL12P48061 ANXA8L1-202ENST00000611655 1398 ntTSL 2 BASIC14.76□□□□□ -0.05
CXCL12P48061 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC14.76□□□□□ -0.05
CXCL12P48061 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
CXCL12P48061 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC14.76□□□□□ -0.05
CXCL12P48061 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
CXCL12P48061 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
CXCL12P48061 SYCN-201ENST00000318438 573 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CXCL12P48061 KRTAP19-5-201ENST00000334151 461 ntAPPRIS P1 BASIC14.76□□□□□ -0.05
CXCL12P48061 HNRNPA1P27-201ENST00000412087 955 ntBASIC14.76□□□□□ -0.05
CXCL12P48061 AC092265.1-201ENST00000422638 498 ntTSL 2 BASIC14.76□□□□□ -0.05
CXCL12P48061 LINC00441-201ENST00000433480 1143 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
CXCL12P48061 AL354861.1-201ENST00000445213 355 ntBASIC14.76□□□□□ -0.05
CXCL12P48061 AC004837.1-201ENST00000446267 564 ntBASIC14.76□□□□□ -0.05
CXCL12P48061 Metazoa_SRP.100-201ENST00000447610 282 ntBASIC14.76□□□□□ -0.05
CXCL12P48061 AC010234.1-201ENST00000494599 870 ntBASIC14.76□□□□□ -0.05
CXCL12P48061 RHEB-207ENST00000496004 744 ntTSL 2 BASIC14.76□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 72 ms