Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 PIK3IP1-202ENST00000402249 999 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
PCDHGA1Q9Y5H4 AL355334.1-201ENST00000417713 215 ntBASIC14.43□□□□□ -0.1
PCDHGA1Q9Y5H4 AL590617.2-201ENST00000432673 917 ntTSL 3 BASIC14.43□□□□□ -0.1
PCDHGA1Q9Y5H4 RN7SL258P-201ENST00000478664 300 ntBASIC14.43□□□□□ -0.1
PCDHGA1Q9Y5H4 AC093330.1-206ENST00000582546 812 ntTSL 3 BASIC14.43□□□□□ -0.1
PCDHGA1Q9Y5H4 ELOF1-202ENST00000586120 658 ntAPPRIS P1 TSL 3 BASIC14.43□□□□□ -0.1
PCDHGA1Q9Y5H4 AC005901.1-201ENST00000592766 552 ntTSL 4 BASIC14.43□□□□□ -0.1
PCDHGA1Q9Y5H4 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
PCDHGA1Q9Y5H4 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
PCDHGA1Q9Y5H4 AC051619.9-201ENST00000623237 597 ntBASIC14.43□□□□□ -0.1
PCDHGA1Q9Y5H4 CCDC197-205ENST00000636493 1279 ntAPPRIS P5 TSL 5 BASIC14.43□□□□□ -0.1
PCDHGA1Q9Y5H4 S1PR2-201ENST00000590320 3582 ntAPPRIS P1 TSL 3 BASIC14.43□□□□□ -0.1
PCDHGA1Q9Y5H4 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
PCDHGA1Q9Y5H4 DENND5B-202ENST00000389082 9470 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
PCDHGA1Q9Y5H4 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
PCDHGA1Q9Y5H4 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC14.43□□□□□ -0.1
PCDHGA1Q9Y5H4 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC14.43□□□□□ -0.1
PCDHGA1Q9Y5H4 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
PCDHGA1Q9Y5H4 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
PCDHGA1Q9Y5H4 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
PCDHGA1Q9Y5H4 SLC51A-201ENST00000296327 1463 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
PCDHGA1Q9Y5H4 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC14.43□□□□□ -0.1
PCDHGA1Q9Y5H4 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC14.43□□□□□ -0.1
PCDHGA1Q9Y5H4 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
PCDHGA1Q9Y5H4 ARHGAP25-216ENST00000497079 1843 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
PCDHGA1Q9Y5H4 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC14.43□□□□□ -0.1
PCDHGA1Q9Y5H4 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
PCDHGA1Q9Y5H4 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
PCDHGA1Q9Y5H4 NORAD-201ENST00000565493 5339 ntBASIC14.43□□□□□ -0.1
PCDHGA1Q9Y5H4 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
PCDHGA1Q9Y5H4 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
PCDHGA1Q9Y5H4 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
PCDHGA1Q9Y5H4 TMEM106A-202ENST00000541594 1330 ntTSL 2 BASIC14.42□□□□□ -0.1
PCDHGA1Q9Y5H4 AL360270.3-201ENST00000609118 1348 ntBASIC14.42□□□□□ -0.1
PCDHGA1Q9Y5H4 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
PCDHGA1Q9Y5H4 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
PCDHGA1Q9Y5H4 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC14.42□□□□□ -0.1
PCDHGA1Q9Y5H4 FEM1B-201ENST00000306917 7122 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
PCDHGA1Q9Y5H4 KIAA1614-AS1-201ENST00000415647 1440 ntTSL 2 BASIC14.42□□□□□ -0.1
PCDHGA1Q9Y5H4 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
PCDHGA1Q9Y5H4 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
PCDHGA1Q9Y5H4 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC14.42□□□□□ -0.1
PCDHGA1Q9Y5H4 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
PCDHGA1Q9Y5H4 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC14.42□□□□□ -0.1
PCDHGA1Q9Y5H4 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC14.42□□□□□ -0.1
PCDHGA1Q9Y5H4 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC14.42□□□□□ -0.1
PCDHGA1Q9Y5H4 AC007326.2-201ENST00000624224 7579 ntBASIC14.42□□□□□ -0.1
PCDHGA1Q9Y5H4 OXNAD1-202ENST00000435829 1643 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
PCDHGA1Q9Y5H4 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC14.42□□□□□ -0.1
PCDHGA1Q9Y5H4 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
PCDHGA1Q9Y5H4 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC14.42□□□□□ -0.1
PCDHGA1Q9Y5H4 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC14.42□□□□□ -0.1
PCDHGA1Q9Y5H4 TPM1-202ENST00000288398 1295 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
PCDHGA1Q9Y5H4 OR9I1-201ENST00000302610 945 ntAPPRIS P1 BASIC14.42□□□□□ -0.1
PCDHGA1Q9Y5H4 AC239868.1-201ENST00000369385 493 ntBASIC14.42□□□□□ -0.1
PCDHGA1Q9Y5H4 RPSAP31-201ENST00000416648 895 ntBASIC14.42□□□□□ -0.1
PCDHGA1Q9Y5H4 MIR663AHG-201ENST00000427348 1213 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
PCDHGA1Q9Y5H4 DNAJB1P1-201ENST00000429417 1024 ntBASIC14.42□□□□□ -0.1
PCDHGA1Q9Y5H4 AC012360.1-201ENST00000433219 674 ntTSL 5 BASIC14.42□□□□□ -0.1
PCDHGA1Q9Y5H4 VDAC1P1-201ENST00000439229 848 ntBASIC14.42□□□□□ -0.1
PCDHGA1Q9Y5H4 AL139246.4-201ENST00000442305 514 ntTSL 3 BASIC14.42□□□□□ -0.1
PCDHGA1Q9Y5H4 AC005234.1-201ENST00000457851 434 ntTSL 3 BASIC14.42□□□□□ -0.1
PCDHGA1Q9Y5H4 RN7SL8P-201ENST00000461771 266 ntBASIC14.42□□□□□ -0.1
PCDHGA1Q9Y5H4 SMIM23-202ENST00000523047 573 ntAPPRIS P5 TSL 2 BASIC14.42□□□□□ -0.1
PCDHGA1Q9Y5H4 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC14.42□□□□□ -0.1
PCDHGA1Q9Y5H4 NEU3-205ENST00000531619 582 ntTSL 5 BASIC14.42□□□□□ -0.1
PCDHGA1Q9Y5H4 AC009065.3-201ENST00000562027 627 ntTSL 5 BASIC14.42□□□□□ -0.1
PCDHGA1Q9Y5H4 AL645941.3-201ENST00000580587 577 ntTSL 4 BASIC14.42□□□□□ -0.1
PCDHGA1Q9Y5H4 AC132192.2-201ENST00000596206 1147 ntBASIC14.42□□□□□ -0.1
PCDHGA1Q9Y5H4 AC011466.3-201ENST00000596563 852 ntTSL 2 BASIC14.42□□□□□ -0.1
PCDHGA1Q9Y5H4 TLDC2-203ENST00000602922 1179 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
PCDHGA1Q9Y5H4 AC103810.10-201ENST00000606504 343 ntBASIC14.42□□□□□ -0.1
PCDHGA1Q9Y5H4 HIST2H2BB-202ENST00000609585 563 ntTSL 2 BASIC14.42□□□□□ -0.1
PCDHGA1Q9Y5H4 LINC00116-203ENST00000611969 441 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
PCDHGA1Q9Y5H4 AC234782.2-201ENST00000614615 1240 ntTSL 2 BASIC14.42□□□□□ -0.1
PCDHGA1Q9Y5H4 HLA-C-210ENST00000640219 976 ntBASIC14.42□□□□□ -0.1
PCDHGA1Q9Y5H4 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC14.42□□□□□ -0.1
PCDHGA1Q9Y5H4 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC14.42□□□□□ -0.1
PCDHGA1Q9Y5H4 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
PCDHGA1Q9Y5H4 PPIL3-201ENST00000286175 1370 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
PCDHGA1Q9Y5H4 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC14.42□□□□□ -0.1
PCDHGA1Q9Y5H4 TOB1-AS1-201ENST00000416263 1351 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
PCDHGA1Q9Y5H4 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
PCDHGA1Q9Y5H4 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
PCDHGA1Q9Y5H4 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
PCDHGA1Q9Y5H4 LINC02447-202ENST00000501888 2146 ntBASIC14.42□□□□□ -0.1
PCDHGA1Q9Y5H4 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
PCDHGA1Q9Y5H4 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC14.42□□□□□ -0.1
PCDHGA1Q9Y5H4 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC14.42□□□□□ -0.1
PCDHGA1Q9Y5H4 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
PCDHGA1Q9Y5H4 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
PCDHGA1Q9Y5H4 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
PCDHGA1Q9Y5H4 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
PCDHGA1Q9Y5H4 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
PCDHGA1Q9Y5H4 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
PCDHGA1Q9Y5H4 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
PCDHGA1Q9Y5H4 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
PCDHGA1Q9Y5H4 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
PCDHGA1Q9Y5H4 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC14.42□□□□□ -0.1
PCDHGA1Q9Y5H4 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 99.9 ms