Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 ALDOA-203ENST00000395248 2447 ntTSL 5 BASIC12.22□□□□□ -0.45
FOXA2Q9Y261 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC12.22□□□□□ -0.45
FOXA2Q9Y261 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
FOXA2Q9Y261 TRAF3-202ENST00000351691 2239 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
FOXA2Q9Y261 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
FOXA2Q9Y261 ATE1-203ENST00000369043 4900 ntAPPRIS ALT1 TSL 1 (best) BASIC12.22□□□□□ -0.45
FOXA2Q9Y261 DPY19L2P2-201ENST00000312132 4078 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
FOXA2Q9Y261 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC12.22□□□□□ -0.45
FOXA2Q9Y261 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
FOXA2Q9Y261 TDRD5-204ENST00000444136 3946 ntAPPRIS ALT1 TSL 1 (best) BASIC12.22□□□□□ -0.45
FOXA2Q9Y261 AMOTL2-201ENST00000249883 4488 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
FOXA2Q9Y261 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC12.22□□□□□ -0.45
FOXA2Q9Y261 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
FOXA2Q9Y261 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC12.22□□□□□ -0.45
FOXA2Q9Y261 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC12.22□□□□□ -0.45
FOXA2Q9Y261 SUN1-204ENST00000403868 978 ntTSL 2 BASIC12.22□□□□□ -0.45
FOXA2Q9Y261 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC12.22□□□□□ -0.45
FOXA2Q9Y261 TPT1P11-201ENST00000458482 498 ntBASIC12.22□□□□□ -0.45
FOXA2Q9Y261 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC12.22□□□□□ -0.45
FOXA2Q9Y261 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC12.22□□□□□ -0.45
FOXA2Q9Y261 RN7SL399P-201ENST00000471648 279 ntBASIC12.22□□□□□ -0.45
FOXA2Q9Y261 FAM86LP-201ENST00000478302 853 ntBASIC12.22□□□□□ -0.45
FOXA2Q9Y261 CDK4-206ENST00000549606 558 ntTSL 2 BASIC12.22□□□□□ -0.45
FOXA2Q9Y261 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC12.22□□□□□ -0.45
FOXA2Q9Y261 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC12.22□□□□□ -0.45
FOXA2Q9Y261 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC12.22□□□□□ -0.45
FOXA2Q9Y261 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC12.22□□□□□ -0.45
FOXA2Q9Y261 MIR3197-201ENST00000582241 73 ntBASIC12.22□□□□□ -0.45
FOXA2Q9Y261 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
FOXA2Q9Y261 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC12.22□□□□□ -0.45
FOXA2Q9Y261 AL391069.4-201ENST00000609583 481 ntBASIC12.22□□□□□ -0.45
FOXA2Q9Y261 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
FOXA2Q9Y261 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC12.22□□□□□ -0.45
FOXA2Q9Y261 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC12.22□□□□□ -0.45
FOXA2Q9Y261 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC12.22□□□□□ -0.45
FOXA2Q9Y261 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC12.22□□□□□ -0.45
FOXA2Q9Y261 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
FOXA2Q9Y261 C5orf66-206ENST00000624272 2479 ntTSL 2 BASIC12.22□□□□□ -0.45
FOXA2Q9Y261 NCKAP5L-201ENST00000335999 4900 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
FOXA2Q9Y261 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
FOXA2Q9Y261 TAF8-203ENST00000372982 1805 ntTSL 2 BASIC12.22□□□□□ -0.45
FOXA2Q9Y261 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC12.22□□□□□ -0.45
FOXA2Q9Y261 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
FOXA2Q9Y261 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
FOXA2Q9Y261 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
FOXA2Q9Y261 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC12.22□□□□□ -0.45
FOXA2Q9Y261 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC12.22□□□□□ -0.45
FOXA2Q9Y261 CYP26A1-202ENST00000371531 2245 ntTSL 2 BASIC12.22□□□□□ -0.45
FOXA2Q9Y261 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
FOXA2Q9Y261 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC12.22□□□□□ -0.45
FOXA2Q9Y261 PES1-204ENST00000402284 2144 ntTSL 5 BASIC12.22□□□□□ -0.45
FOXA2Q9Y261 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
FOXA2Q9Y261 CDH23-201ENST00000224721 11139 ntAPPRIS P5 TSL 5 BASIC12.22□□□□□ -0.45
FOXA2Q9Y261 CDH23-214ENST00000622827 11122 ntAPPRIS ALT1 TSL 5 BASIC12.22□□□□□ -0.45
FOXA2Q9Y261 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
FOXA2Q9Y261 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
FOXA2Q9Y261 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
FOXA2Q9Y261 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
FOXA2Q9Y261 WDR20-202ENST00000322340 3060 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
FOXA2Q9Y261 BCL11B-201ENST00000345514 7603 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
FOXA2Q9Y261 FAM84B-201ENST00000304916 5404 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
FOXA2Q9Y261 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC12.21□□□□□ -0.45
FOXA2Q9Y261 MCRS1-211ENST00000550165 1936 ntAPPRIS P1 TSL 5 BASIC12.21□□□□□ -0.45
FOXA2Q9Y261 POLR2B-205ENST00000441246 3839 ntTSL 2 BASIC12.21□□□□□ -0.45
FOXA2Q9Y261 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
FOXA2Q9Y261 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC12.21□□□□□ -0.45
FOXA2Q9Y261 BCL10-201ENST00000370580 2819 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
FOXA2Q9Y261 UHRF1BP1L-201ENST00000279907 5168 ntAPPRIS P4 TSL 1 (best) BASIC12.21□□□□□ -0.45
FOXA2Q9Y261 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC12.21□□□□□ -0.45
FOXA2Q9Y261 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
FOXA2Q9Y261 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
FOXA2Q9Y261 AC018665.1-201ENST00000622927 1362 ntBASIC12.21□□□□□ -0.45
FOXA2Q9Y261 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC12.21□□□□□ -0.45
FOXA2Q9Y261 ZBED1-202ENST00000381222 4507 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
FOXA2Q9Y261 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC12.21□□□□□ -0.45
FOXA2Q9Y261 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC12.21□□□□□ -0.45
FOXA2Q9Y261 JPH1-201ENST00000342232 4378 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
FOXA2Q9Y261 CCNB1-201ENST00000256442 2169 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
FOXA2Q9Y261 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC12.21□□□□□ -0.45
FOXA2Q9Y261 ZFP36L1-201ENST00000336440 3026 ntAPPRIS P1 TSL 2 BASIC12.21□□□□□ -0.45
FOXA2Q9Y261 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
FOXA2Q9Y261 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
FOXA2Q9Y261 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC12.21□□□□□ -0.45
FOXA2Q9Y261 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
FOXA2Q9Y261 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC12.21□□□□□ -0.45
FOXA2Q9Y261 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC12.21□□□□□ -0.45
FOXA2Q9Y261 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC12.21□□□□□ -0.45
FOXA2Q9Y261 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC12.21□□□□□ -0.45
FOXA2Q9Y261 FADS2-205ENST00000517839 469 ntTSL 3 BASIC12.21□□□□□ -0.45
FOXA2Q9Y261 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC12.21□□□□□ -0.45
FOXA2Q9Y261 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC12.21□□□□□ -0.45
FOXA2Q9Y261 AC190387.1-201ENST00000551683 408 ntBASIC12.21□□□□□ -0.45
FOXA2Q9Y261 COQ6-210ENST00000554920 649 ntTSL 3 BASIC12.21□□□□□ -0.45
FOXA2Q9Y261 COX11-202ENST00000571584 1108 ntTSL 2 BASIC12.21□□□□□ -0.45
FOXA2Q9Y261 AC140912.1-201ENST00000577171 1054 ntBASIC12.21□□□□□ -0.45
FOXA2Q9Y261 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC12.21□□□□□ -0.45
FOXA2Q9Y261 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC12.21□□□□□ -0.45
FOXA2Q9Y261 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC12.21□□□□□ -0.45
FOXA2Q9Y261 PNPLA5-201ENST00000216177 2539 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
FOXA2Q9Y261 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.45
Retrieved 100 of 98,524 protein–RNA pairs in 88.4 ms