Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
HDAC4P56524 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC15.76■□□□□ 0.11
HDAC4P56524 AC134312.5-201ENST00000568031 1313 ntBASIC15.76■□□□□ 0.11
HDAC4P56524 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
HDAC4P56524 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC15.76■□□□□ 0.11
HDAC4P56524 IRAK1-203ENST00000369980 3666 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
HDAC4P56524 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
HDAC4P56524 NWD2-201ENST00000309447 8325 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
HDAC4P56524 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC15.76■□□□□ 0.11
HDAC4P56524 CHD4-201ENST00000357008 6496 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
HDAC4P56524 CICP4-201ENST00000447359 2812 ntBASIC15.76■□□□□ 0.11
HDAC4P56524 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
HDAC4P56524 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC15.76■□□□□ 0.11
HDAC4P56524 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
HDAC4P56524 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
HDAC4P56524 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
HDAC4P56524 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
HDAC4P56524 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC15.76■□□□□ 0.11
HDAC4P56524 COX5BP8-201ENST00000416911 349 ntBASIC15.76■□□□□ 0.11
HDAC4P56524 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC15.76■□□□□ 0.11
HDAC4P56524 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC15.76■□□□□ 0.11
HDAC4P56524 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC15.76■□□□□ 0.11
HDAC4P56524 AC011495.1-201ENST00000498085 584 ntBASIC15.76■□□□□ 0.11
HDAC4P56524 AC068587.3-201ENST00000526613 355 ntBASIC15.76■□□□□ 0.11
HDAC4P56524 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
HDAC4P56524 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC15.76■□□□□ 0.11
HDAC4P56524 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC15.76■□□□□ 0.11
HDAC4P56524 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC15.76■□□□□ 0.11
HDAC4P56524 AC132938.2-201ENST00000579188 680 ntBASIC15.76■□□□□ 0.11
HDAC4P56524 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC15.76■□□□□ 0.11
HDAC4P56524 RPS15-202ENST00000585665 467 ntTSL 3 BASIC15.76■□□□□ 0.11
HDAC4P56524 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC15.76■□□□□ 0.11
HDAC4P56524 AL591163.1-201ENST00000641757 987 ntBASIC15.76■□□□□ 0.11
HDAC4P56524 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC15.76■□□□□ 0.11
HDAC4P56524 AL390755.1-201ENST00000623716 2027 ntBASIC15.76■□□□□ 0.11
HDAC4P56524 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
HDAC4P56524 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC15.76■□□□□ 0.11
HDAC4P56524 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC15.76■□□□□ 0.11
HDAC4P56524 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
HDAC4P56524 SLC41A1-201ENST00000367137 4997 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
HDAC4P56524 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
HDAC4P56524 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
HDAC4P56524 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
HDAC4P56524 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
HDAC4P56524 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
HDAC4P56524 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
HDAC4P56524 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC15.76■□□□□ 0.11
HDAC4P56524 GCM2-201ENST00000379491 2441 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
HDAC4P56524 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
HDAC4P56524 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC15.76■□□□□ 0.11
HDAC4P56524 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC15.76■□□□□ 0.11
HDAC4P56524 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
HDAC4P56524 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC15.76■□□□□ 0.11
HDAC4P56524 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC15.76■□□□□ 0.11
HDAC4P56524 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC15.76■□□□□ 0.11
HDAC4P56524 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
HDAC4P56524 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
HDAC4P56524 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
HDAC4P56524 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC15.75■□□□□ 0.11
HDAC4P56524 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
HDAC4P56524 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC15.75■□□□□ 0.11
HDAC4P56524 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
HDAC4P56524 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC15.75■□□□□ 0.11
HDAC4P56524 POU2F2-207ENST00000529067 2657 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
HDAC4P56524 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC15.75■□□□□ 0.11
HDAC4P56524 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC15.75■□□□□ 0.11
HDAC4P56524 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
HDAC4P56524 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC15.75■□□□□ 0.11
HDAC4P56524 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
HDAC4P56524 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC15.75■□□□□ 0.11
HDAC4P56524 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC15.75■□□□□ 0.11
HDAC4P56524 MTHFR-210ENST00000641407 2387 ntBASIC15.75■□□□□ 0.11
HDAC4P56524 CEP170B-204ENST00000556508 6683 ntTSL 5 BASIC15.75■□□□□ 0.11
HDAC4P56524 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC15.75■□□□□ 0.11
HDAC4P56524 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC15.75■□□□□ 0.11
HDAC4P56524 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
HDAC4P56524 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
HDAC4P56524 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
HDAC4P56524 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC15.75■□□□□ 0.11
HDAC4P56524 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC15.75■□□□□ 0.11
HDAC4P56524 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC15.75■□□□□ 0.11
HDAC4P56524 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC15.75■□□□□ 0.11
HDAC4P56524 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC15.75■□□□□ 0.11
HDAC4P56524 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC15.75■□□□□ 0.11
HDAC4P56524 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC15.75■□□□□ 0.11
HDAC4P56524 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
HDAC4P56524 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
HDAC4P56524 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC15.75■□□□□ 0.11
HDAC4P56524 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
HDAC4P56524 PTP4A1P2-201ENST00000546033 454 ntBASIC15.75■□□□□ 0.11
HDAC4P56524 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC15.75■□□□□ 0.11
HDAC4P56524 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
HDAC4P56524 IGHV3-72-202ENST00000621503 303 ntBASIC15.75■□□□□ 0.11
HDAC4P56524 AL603764.1-201ENST00000636452 321 ntBASIC15.75■□□□□ 0.11
HDAC4P56524 AC105233.6-201ENST00000642093 218 ntBASIC15.75■□□□□ 0.11
HDAC4P56524 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC15.75■□□□□ 0.11
HDAC4P56524 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
HDAC4P56524 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
HDAC4P56524 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
HDAC4P56524 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 41.5 ms