Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
LIM2P55344 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
LIM2P55344 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC14.31□□□□□ -0.12
LIM2P55344 DIAPH2-204ENST00000373054 3376 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
LIM2P55344 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
LIM2P55344 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
LIM2P55344 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
LIM2P55344 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
LIM2P55344 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
LIM2P55344 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC14.31□□□□□ -0.12
LIM2P55344 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
LIM2P55344 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC14.3□□□□□ -0.12
LIM2P55344 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC14.3□□□□□ -0.12
LIM2P55344 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
LIM2P55344 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
LIM2P55344 KRBOX4-202ENST00000344302 2774 ntAPPRIS ALT2 TSL 2 BASIC14.3□□□□□ -0.12
LIM2P55344 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
LIM2P55344 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC14.3□□□□□ -0.12
LIM2P55344 ADAM15-204ENST00000359280 2874 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
LIM2P55344 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
LIM2P55344 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
LIM2P55344 SF1-209ENST00000433274 2317 ntTSL 2 BASIC14.3□□□□□ -0.12
LIM2P55344 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
LIM2P55344 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC14.3□□□□□ -0.12
LIM2P55344 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
LIM2P55344 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC14.3□□□□□ -0.12
LIM2P55344 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
LIM2P55344 AC092933.1-201ENST00000393644 945 ntBASIC14.3□□□□□ -0.12
LIM2P55344 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC14.3□□□□□ -0.12
LIM2P55344 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC14.3□□□□□ -0.12
LIM2P55344 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
LIM2P55344 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC14.3□□□□□ -0.12
LIM2P55344 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
LIM2P55344 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC14.3□□□□□ -0.12
LIM2P55344 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC14.3□□□□□ -0.12
LIM2P55344 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC14.3□□□□□ -0.12
LIM2P55344 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC14.3□□□□□ -0.12
LIM2P55344 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC14.3□□□□□ -0.12
LIM2P55344 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
LIM2P55344 AL035252.4-201ENST00000624174 288 ntBASIC14.3□□□□□ -0.12
LIM2P55344 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
LIM2P55344 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
LIM2P55344 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
LIM2P55344 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
LIM2P55344 AC018665.1-201ENST00000622927 1362 ntBASIC14.3□□□□□ -0.12
LIM2P55344 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
LIM2P55344 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
LIM2P55344 AC023090.2-201ENST00000625182 2110 ntBASIC14.3□□□□□ -0.12
LIM2P55344 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC14.3□□□□□ -0.12
LIM2P55344 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC14.3□□□□□ -0.12
LIM2P55344 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
LIM2P55344 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
LIM2P55344 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
LIM2P55344 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
LIM2P55344 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
LIM2P55344 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
LIM2P55344 GTF2H2C-210ENST00000510979 2952 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
LIM2P55344 ATXN10-202ENST00000381061 3135 ntTSL 2 BASIC14.3□□□□□ -0.12
LIM2P55344 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC14.3□□□□□ -0.12
LIM2P55344 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
LIM2P55344 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
LIM2P55344 AL138709.1-201ENST00000614840 1693 ntBASIC14.3□□□□□ -0.12
LIM2P55344 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC14.3□□□□□ -0.12
LIM2P55344 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
LIM2P55344 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
LIM2P55344 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
LIM2P55344 POU2F2-207ENST00000529067 2657 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
LIM2P55344 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
LIM2P55344 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
LIM2P55344 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC14.29□□□□□ -0.12
LIM2P55344 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC14.29□□□□□ -0.12
LIM2P55344 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
LIM2P55344 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
LIM2P55344 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC14.29□□□□□ -0.12
LIM2P55344 UCKL1-AS1-201ENST00000623569 3602 ntBASIC14.29□□□□□ -0.12
LIM2P55344 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
LIM2P55344 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
LIM2P55344 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
LIM2P55344 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
LIM2P55344 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
LIM2P55344 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC14.29□□□□□ -0.12
LIM2P55344 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
LIM2P55344 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC14.29□□□□□ -0.12
LIM2P55344 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC14.29□□□□□ -0.12
LIM2P55344 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC14.29□□□□□ -0.12
LIM2P55344 GNRHR2-203ENST00000581100 1187 ntBASIC14.29□□□□□ -0.12
LIM2P55344 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC14.29□□□□□ -0.12
LIM2P55344 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
LIM2P55344 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC14.29□□□□□ -0.12
LIM2P55344 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC14.29□□□□□ -0.12
LIM2P55344 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC14.29□□□□□ -0.12
LIM2P55344 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
LIM2P55344 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC14.29□□□□□ -0.12
LIM2P55344 ALG1-204ENST00000588623 2671 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
LIM2P55344 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
LIM2P55344 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
LIM2P55344 FOS-202ENST00000535987 1402 ntTSL 2 BASIC14.29□□□□□ -0.12
LIM2P55344 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
LIM2P55344 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC14.29□□□□□ -0.12
LIM2P55344 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC14.29□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms