Protein–RNA interactions for Protein: Q9C0I3

CCSER1, Serine-rich coiled-coil domain-containing protein 1, humanhuman

Predictions only

Length 900 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCSER1Q9C0I3 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
CCSER1Q9C0I3 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC16.82■□□□□ 0.28
CCSER1Q9C0I3 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC16.82■□□□□ 0.28
CCSER1Q9C0I3 FUZ-207ENST00000526575 482 ntTSL 4 BASIC16.82■□□□□ 0.28
CCSER1Q9C0I3 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CCSER1Q9C0I3 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC16.82■□□□□ 0.28
CCSER1Q9C0I3 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC16.82■□□□□ 0.28
CCSER1Q9C0I3 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC16.82■□□□□ 0.28
CCSER1Q9C0I3 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
CCSER1Q9C0I3 AL035252.4-201ENST00000624174 288 ntBASIC16.82■□□□□ 0.28
CCSER1Q9C0I3 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC16.82■□□□□ 0.28
CCSER1Q9C0I3 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CCSER1Q9C0I3 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
CCSER1Q9C0I3 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
CCSER1Q9C0I3 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CCSER1Q9C0I3 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
CCSER1Q9C0I3 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC16.82■□□□□ 0.28
CCSER1Q9C0I3 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CCSER1Q9C0I3 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
CCSER1Q9C0I3 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCSER1Q9C0I3 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCSER1Q9C0I3 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CCSER1Q9C0I3 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCSER1Q9C0I3 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCSER1Q9C0I3 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC16.81■□□□□ 0.28
CCSER1Q9C0I3 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCSER1Q9C0I3 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CCSER1Q9C0I3 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCSER1Q9C0I3 INTS4P1-203ENST00000641008 3683 ntBASIC16.81■□□□□ 0.28
CCSER1Q9C0I3 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC16.81■□□□□ 0.28
CCSER1Q9C0I3 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCSER1Q9C0I3 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCSER1Q9C0I3 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC16.81■□□□□ 0.28
CCSER1Q9C0I3 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CCSER1Q9C0I3 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CCSER1Q9C0I3 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCSER1Q9C0I3 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCSER1Q9C0I3 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCSER1Q9C0I3 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCSER1Q9C0I3 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCSER1Q9C0I3 AC092933.1-201ENST00000393644 945 ntBASIC16.81■□□□□ 0.28
CCSER1Q9C0I3 AC005034.1-201ENST00000426657 489 ntBASIC16.81■□□□□ 0.28
CCSER1Q9C0I3 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CCSER1Q9C0I3 PTPA-220ENST00000436883 532 ntTSL 4 BASIC16.81■□□□□ 0.28
CCSER1Q9C0I3 INE1-201ENST00000456273 945 ntBASIC16.81■□□□□ 0.28
CCSER1Q9C0I3 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCSER1Q9C0I3 AC022447.6-201ENST00000515522 438 ntBASIC16.81■□□□□ 0.28
CCSER1Q9C0I3 SLC25A47P1-201ENST00000531577 414 ntBASIC16.81■□□□□ 0.28
CCSER1Q9C0I3 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC16.81■□□□□ 0.28
CCSER1Q9C0I3 AC025279.2-201ENST00000569730 653 ntBASIC16.81■□□□□ 0.28
CCSER1Q9C0I3 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCSER1Q9C0I3 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC16.81■□□□□ 0.28
CCSER1Q9C0I3 AC138466.3-201ENST00000619983 221 ntBASIC16.81■□□□□ 0.28
CCSER1Q9C0I3 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CCSER1Q9C0I3 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC16.81■□□□□ 0.28
CCSER1Q9C0I3 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCSER1Q9C0I3 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC16.81■□□□□ 0.28
CCSER1Q9C0I3 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CCSER1Q9C0I3 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC16.81■□□□□ 0.28
CCSER1Q9C0I3 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCSER1Q9C0I3 SELPLG-202ENST00000388962 1613 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
CCSER1Q9C0I3 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CCSER1Q9C0I3 NUP54-217ENST00000514987 1563 ntTSL 2 BASIC16.81■□□□□ 0.28
CCSER1Q9C0I3 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CCSER1Q9C0I3 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
CCSER1Q9C0I3 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC16.8■□□□□ 0.28
CCSER1Q9C0I3 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
CCSER1Q9C0I3 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC16.8■□□□□ 0.28
CCSER1Q9C0I3 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CCSER1Q9C0I3 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CCSER1Q9C0I3 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC16.8■□□□□ 0.28
CCSER1Q9C0I3 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC16.8■□□□□ 0.28
CCSER1Q9C0I3 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CCSER1Q9C0I3 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCSER1Q9C0I3 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC16.8■□□□□ 0.28
CCSER1Q9C0I3 RPL28-203ENST00000428193 573 ntTSL 2 BASIC16.8■□□□□ 0.28
CCSER1Q9C0I3 GSAP-205ENST00000430584 600 ntTSL 5 BASIC16.8■□□□□ 0.28
CCSER1Q9C0I3 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC16.8■□□□□ 0.28
CCSER1Q9C0I3 RPL28-204ENST00000431533 590 ntTSL 2 BASIC16.8■□□□□ 0.28
CCSER1Q9C0I3 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC16.8■□□□□ 0.28
CCSER1Q9C0I3 AL355864.2-201ENST00000447420 863 ntBASIC16.8■□□□□ 0.28
CCSER1Q9C0I3 GCOM2-201ENST00000509133 1104 ntBASIC16.8■□□□□ 0.28
CCSER1Q9C0I3 AL356805.1-201ENST00000556383 341 ntTSL 3 BASIC16.8■□□□□ 0.28
CCSER1Q9C0I3 RPL28-207ENST00000558815 616 ntTSL 2 BASIC16.8■□□□□ 0.28
CCSER1Q9C0I3 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CCSER1Q9C0I3 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC16.8■□□□□ 0.28
CCSER1Q9C0I3 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC16.8■□□□□ 0.28
CCSER1Q9C0I3 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCSER1Q9C0I3 ETV2-208ENST00000621247 941 ntTSL 5 BASIC16.8■□□□□ 0.28
CCSER1Q9C0I3 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC16.8■□□□□ 0.28
CCSER1Q9C0I3 FAM114A2-215ENST00000522858 3379 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCSER1Q9C0I3 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCSER1Q9C0I3 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCSER1Q9C0I3 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
CCSER1Q9C0I3 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCSER1Q9C0I3 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCSER1Q9C0I3 MVK-214ENST00000629016 1591 ntTSL 5 BASIC16.8■□□□□ 0.28
CCSER1Q9C0I3 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCSER1Q9C0I3 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCSER1Q9C0I3 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC16.8■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 41 ms