Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC15.79■□□□□ 0.12
HDAC4P56524 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
HDAC4P56524 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
HDAC4P56524 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC15.79■□□□□ 0.12
HDAC4P56524 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC15.79■□□□□ 0.12
HDAC4P56524 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC15.79■□□□□ 0.12
HDAC4P56524 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
HDAC4P56524 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC15.79■□□□□ 0.12
HDAC4P56524 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC15.79■□□□□ 0.12
HDAC4P56524 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC15.79■□□□□ 0.12
HDAC4P56524 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
HDAC4P56524 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
HDAC4P56524 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
HDAC4P56524 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
HDAC4P56524 NDFIP2-201ENST00000218652 4625 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
HDAC4P56524 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
HDAC4P56524 AC018442.1-201ENST00000421439 2061 ntBASIC15.79■□□□□ 0.12
HDAC4P56524 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC15.79■□□□□ 0.12
HDAC4P56524 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC15.78■□□□□ 0.12
HDAC4P56524 GRM1-201ENST00000282753 6622 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
HDAC4P56524 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
HDAC4P56524 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
HDAC4P56524 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
HDAC4P56524 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
HDAC4P56524 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC15.78■□□□□ 0.12
HDAC4P56524 AC055811.4-201ENST00000624039 1754 ntBASIC15.78■□□□□ 0.12
HDAC4P56524 KRT8P35-201ENST00000483942 1338 ntBASIC15.78■□□□□ 0.12
HDAC4P56524 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC15.78■□□□□ 0.12
HDAC4P56524 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
HDAC4P56524 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
HDAC4P56524 CMTM6-201ENST00000205636 3863 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
HDAC4P56524 DMTN-201ENST00000265800 2554 ntTSL 5 BASIC15.78■□□□□ 0.12
HDAC4P56524 DMTN-207ENST00000517305 2551 ntTSL 5 BASIC15.78■□□□□ 0.12
HDAC4P56524 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
HDAC4P56524 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
HDAC4P56524 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC15.78■□□□□ 0.12
HDAC4P56524 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
HDAC4P56524 AL035633.1-201ENST00000406139 838 ntBASIC15.78■□□□□ 0.12
HDAC4P56524 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC15.78■□□□□ 0.12
HDAC4P56524 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC15.78■□□□□ 0.12
HDAC4P56524 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC15.78■□□□□ 0.12
HDAC4P56524 AC012441.1-201ENST00000446669 685 ntBASIC15.78■□□□□ 0.12
HDAC4P56524 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC15.78■□□□□ 0.12
HDAC4P56524 INE1-201ENST00000456273 945 ntBASIC15.78■□□□□ 0.12
HDAC4P56524 TAF8-206ENST00000472818 719 ntTSL 2 BASIC15.78■□□□□ 0.12
HDAC4P56524 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
HDAC4P56524 GIMAP3P-201ENST00000495150 836 ntBASIC15.78■□□□□ 0.12
HDAC4P56524 AC026434.2-201ENST00000506094 1078 ntBASIC15.78■□□□□ 0.12
HDAC4P56524 NEU3-203ENST00000529024 581 ntTSL 3 BASIC15.78■□□□□ 0.12
HDAC4P56524 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC15.78■□□□□ 0.12
HDAC4P56524 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC15.78■□□□□ 0.12
HDAC4P56524 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
HDAC4P56524 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
HDAC4P56524 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC15.78■□□□□ 0.12
HDAC4P56524 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
HDAC4P56524 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
HDAC4P56524 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
HDAC4P56524 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
HDAC4P56524 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC15.78■□□□□ 0.12
HDAC4P56524 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC15.78■□□□□ 0.12
HDAC4P56524 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
HDAC4P56524 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC15.78■□□□□ 0.12
HDAC4P56524 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
HDAC4P56524 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
HDAC4P56524 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC15.77■□□□□ 0.12
HDAC4P56524 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
HDAC4P56524 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC15.77■□□□□ 0.12
HDAC4P56524 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
HDAC4P56524 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
HDAC4P56524 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
HDAC4P56524 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC15.77■□□□□ 0.12
HDAC4P56524 TMEM200C-202ENST00000581347 10638 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.12
HDAC4P56524 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.12
HDAC4P56524 OPA1-203ENST00000361715 6384 ntTSL 5 BASIC15.77■□□□□ 0.12
HDAC4P56524 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC15.77■□□□□ 0.12
HDAC4P56524 BAATP1-201ENST00000412284 1225 ntBASIC15.77■□□□□ 0.12
HDAC4P56524 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC15.77■□□□□ 0.12
HDAC4P56524 PTPA-220ENST00000436883 532 ntTSL 4 BASIC15.77■□□□□ 0.12
HDAC4P56524 KRT18P25-201ENST00000508931 1278 ntBASIC15.77■□□□□ 0.12
HDAC4P56524 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC15.77■□□□□ 0.12
HDAC4P56524 TDH-203ENST00000531764 1110 ntBASIC15.77■□□□□ 0.12
HDAC4P56524 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC15.77■□□□□ 0.12
HDAC4P56524 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.12
HDAC4P56524 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC15.77■□□□□ 0.12
HDAC4P56524 SNX18-202ENST00000343017 3140 ntBASIC15.77■□□□□ 0.11
HDAC4P56524 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
HDAC4P56524 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.11
HDAC4P56524 LRRC59-203ENST00000576448 1531 ntBASIC15.77■□□□□ 0.11
HDAC4P56524 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
HDAC4P56524 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC15.77■□□□□ 0.11
HDAC4P56524 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
HDAC4P56524 ADAM15-204ENST00000359280 2874 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.11
HDAC4P56524 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
HDAC4P56524 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
HDAC4P56524 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC15.77■□□□□ 0.11
HDAC4P56524 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC15.76■□□□□ 0.11
HDAC4P56524 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
HDAC4P56524 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
HDAC4P56524 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
HDAC4P56524 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms