Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC15.65■□□□□ 0.1
PTPN9P43378 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC15.65■□□□□ 0.1
PTPN9P43378 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
PTPN9P43378 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
PTPN9P43378 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
PTPN9P43378 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC15.64■□□□□ 0.09
PTPN9P43378 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC15.64■□□□□ 0.09
PTPN9P43378 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC15.64■□□□□ 0.09
PTPN9P43378 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
PTPN9P43378 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
PTPN9P43378 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
PTPN9P43378 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC15.64■□□□□ 0.09
PTPN9P43378 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC15.64■□□□□ 0.09
PTPN9P43378 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC15.64■□□□□ 0.09
PTPN9P43378 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC15.64■□□□□ 0.09
PTPN9P43378 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC15.64■□□□□ 0.09
PTPN9P43378 C2orf27AP3-201ENST00000434123 579 ntBASIC15.64■□□□□ 0.09
PTPN9P43378 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC15.64■□□□□ 0.09
PTPN9P43378 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
PTPN9P43378 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC15.64■□□□□ 0.09
PTPN9P43378 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC15.64■□□□□ 0.09
PTPN9P43378 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC15.64■□□□□ 0.09
PTPN9P43378 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC15.64■□□□□ 0.09
PTPN9P43378 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC15.64■□□□□ 0.09
PTPN9P43378 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC15.64■□□□□ 0.09
PTPN9P43378 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC15.64■□□□□ 0.09
PTPN9P43378 AL354718.3-201ENST00000616414 581 ntBASIC15.64■□□□□ 0.09
PTPN9P43378 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC15.64■□□□□ 0.09
PTPN9P43378 CR382287.1-201ENST00000623954 586 ntBASIC15.64■□□□□ 0.09
PTPN9P43378 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
PTPN9P43378 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
PTPN9P43378 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC15.64■□□□□ 0.09
PTPN9P43378 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC15.64■□□□□ 0.09
PTPN9P43378 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
PTPN9P43378 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
PTPN9P43378 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC15.64■□□□□ 0.09
PTPN9P43378 MX1-218ENST00000619682 1980 ntTSL 5 BASIC15.64■□□□□ 0.09
PTPN9P43378 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
PTPN9P43378 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC15.63■□□□□ 0.09
PTPN9P43378 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
PTPN9P43378 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
PTPN9P43378 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
PTPN9P43378 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC15.63■□□□□ 0.09
PTPN9P43378 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
PTPN9P43378 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC15.63■□□□□ 0.09
PTPN9P43378 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC15.63■□□□□ 0.09
PTPN9P43378 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
PTPN9P43378 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
PTPN9P43378 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC15.63■□□□□ 0.09
PTPN9P43378 AC113367.3-201ENST00000508316 1912 ntBASIC15.63■□□□□ 0.09
PTPN9P43378 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC15.63■□□□□ 0.09
PTPN9P43378 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC15.63■□□□□ 0.09
PTPN9P43378 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
PTPN9P43378 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
PTPN9P43378 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
PTPN9P43378 TPM3P8-201ENST00000330554 643 ntBASIC15.63■□□□□ 0.09
PTPN9P43378 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
PTPN9P43378 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC15.63■□□□□ 0.09
PTPN9P43378 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
PTPN9P43378 AC016694.1-201ENST00000434179 700 ntBASIC15.63■□□□□ 0.09
PTPN9P43378 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC15.63■□□□□ 0.09
PTPN9P43378 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
PTPN9P43378 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC15.63■□□□□ 0.09
PTPN9P43378 GAPDHP21-201ENST00000450301 1010 ntBASIC15.63■□□□□ 0.09
PTPN9P43378 FTH1P14-201ENST00000482930 551 ntBASIC15.63■□□□□ 0.09
PTPN9P43378 FTLP10-202ENST00000505798 471 ntBASIC15.63■□□□□ 0.09
PTPN9P43378 RNA5SP486-201ENST00000515961 83 ntBASIC15.63■□□□□ 0.09
PTPN9P43378 AC131206.1-201ENST00000538078 1211 ntBASIC15.63■□□□□ 0.09
PTPN9P43378 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
PTPN9P43378 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC15.63■□□□□ 0.09
PTPN9P43378 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC15.63■□□□□ 0.09
PTPN9P43378 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC15.63■□□□□ 0.09
PTPN9P43378 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC15.63■□□□□ 0.09
PTPN9P43378 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
PTPN9P43378 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC15.63■□□□□ 0.09
PTPN9P43378 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
PTPN9P43378 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
PTPN9P43378 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
PTPN9P43378 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC15.63■□□□□ 0.09
PTPN9P43378 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC15.63■□□□□ 0.09
PTPN9P43378 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
PTPN9P43378 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
PTPN9P43378 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
PTPN9P43378 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC15.62■□□□□ 0.09
PTPN9P43378 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
PTPN9P43378 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
PTPN9P43378 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC15.62■□□□□ 0.09
PTPN9P43378 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
PTPN9P43378 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC15.62■□□□□ 0.09
PTPN9P43378 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
PTPN9P43378 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
PTPN9P43378 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
PTPN9P43378 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
PTPN9P43378 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
PTPN9P43378 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC15.62■□□□□ 0.09
PTPN9P43378 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
PTPN9P43378 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC15.62■□□□□ 0.09
PTPN9P43378 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
PTPN9P43378 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
PTPN9P43378 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC15.62■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 47 ms