Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 KRT17P7-201ENST00000451704 1104 ntBASIC15.25■□□□□ 0.03
PTPN4P29074 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC15.25■□□□□ 0.03
PTPN4P29074 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC15.25■□□□□ 0.03
PTPN4P29074 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
PTPN4P29074 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC15.25■□□□□ 0.03
PTPN4P29074 API5-211ENST00000534695 560 ntTSL 5 BASIC15.25■□□□□ 0.03
PTPN4P29074 AL512361.1-201ENST00000554200 418 ntBASIC15.25■□□□□ 0.03
PTPN4P29074 AC010336.2-201ENST00000564226 506 ntBASIC15.25■□□□□ 0.03
PTPN4P29074 AC140912.1-201ENST00000577171 1054 ntBASIC15.25■□□□□ 0.03
PTPN4P29074 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC15.25■□□□□ 0.03
PTPN4P29074 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
PTPN4P29074 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC15.25■□□□□ 0.03
PTPN4P29074 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC15.25■□□□□ 0.03
PTPN4P29074 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC15.25■□□□□ 0.03
PTPN4P29074 MTRF1L-202ENST00000367231 3539 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
PTPN4P29074 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
PTPN4P29074 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
PTPN4P29074 ZBTB7C-213ENST00000588982 4949 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
PTPN4P29074 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC15.25■□□□□ 0.03
PTPN4P29074 SYNRG-231ENST00000622045 3859 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
PTPN4P29074 MFSD11-211ENST00000588460 3612 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
PTPN4P29074 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
PTPN4P29074 ZNF70-201ENST00000341976 6924 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
PTPN4P29074 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
PTPN4P29074 ZBTB7B-207ENST00000535420 3777 ntAPPRIS P3 TSL 5 BASIC15.25■□□□□ 0.03
PTPN4P29074 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
PTPN4P29074 NFATC4-207ENST00000553469 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
PTPN4P29074 RLIM-202ENST00000349225 3478 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
PTPN4P29074 AP001267.2-201ENST00000532619 2086 ntBASIC15.24■□□□□ 0.03
PTPN4P29074 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC15.24■□□□□ 0.03
PTPN4P29074 KRT8P12-202ENST00000472924 1397 ntBASIC15.24■□□□□ 0.03
PTPN4P29074 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC15.24■□□□□ 0.03
PTPN4P29074 FBXL16-201ENST00000324361 3411 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PTPN4P29074 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
PTPN4P29074 DBN1-203ENST00000393565 2701 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
PTPN4P29074 SLC41A1-201ENST00000367137 4997 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PTPN4P29074 UBTF-205ENST00000526094 2459 ntTSL 5 BASIC15.24■□□□□ 0.03
PTPN4P29074 SLFNL1-204ENST00000372613 2654 ntTSL 2 BASIC15.24■□□□□ 0.03
PTPN4P29074 TBC1D24-207ENST00000627285 4382 ntAPPRIS P3 TSL 5 BASIC15.24■□□□□ 0.03
PTPN4P29074 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC15.24■□□□□ 0.03
PTPN4P29074 RIC1-201ENST00000251879 4127 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
PTPN4P29074 LMAN2L-201ENST00000264963 2397 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
PTPN4P29074 NR1H3-221ENST00000481889 1704 ntTSL 5 BASIC15.24■□□□□ 0.03
PTPN4P29074 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PTPN4P29074 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
PTPN4P29074 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
PTPN4P29074 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC15.24■□□□□ 0.03
PTPN4P29074 DFFBP1-201ENST00000433250 979 ntBASIC15.24■□□□□ 0.03
PTPN4P29074 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC15.24■□□□□ 0.03
PTPN4P29074 AC104794.3-201ENST00000566840 1248 ntBASIC15.24■□□□□ 0.03
PTPN4P29074 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC15.24■□□□□ 0.03
PTPN4P29074 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC15.24■□□□□ 0.03
PTPN4P29074 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC15.24■□□□□ 0.03
PTPN4P29074 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PTPN4P29074 ZNF655-201ENST00000252713 2535 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
PTPN4P29074 SDC1-201ENST00000254351 3147 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PTPN4P29074 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
PTPN4P29074 TSPAN18-207ENST00000520358 3316 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
PTPN4P29074 CEP135-202ENST00000422247 2092 ntTSL 2 BASIC15.24■□□□□ 0.03
PTPN4P29074 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC15.24■□□□□ 0.03
PTPN4P29074 DNASE1L1-206ENST00000393638 2665 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
PTPN4P29074 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC15.24■□□□□ 0.03
PTPN4P29074 SLC4A11-202ENST00000380059 3229 ntAPPRIS ALT2 TSL 2 BASIC15.24■□□□□ 0.03
PTPN4P29074 DNAJC27-201ENST00000264711 4992 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PTPN4P29074 RBM6-201ENST00000266022 3750 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PTPN4P29074 ZNF718-202ENST00000609714 2772 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
PTPN4P29074 ZNF576-201ENST00000336564 2566 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PTPN4P29074 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
PTPN4P29074 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC15.24■□□□□ 0.03
PTPN4P29074 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC15.24■□□□□ 0.03
PTPN4P29074 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PTPN4P29074 AL391825.1-201ENST00000457671 1364 ntBASIC15.24■□□□□ 0.03
PTPN4P29074 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
PTPN4P29074 KCP-206ENST00000613019 4853 ntAPPRIS P5 TSL 5 BASIC15.23■□□□□ 0.03
PTPN4P29074 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
PTPN4P29074 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PTPN4P29074 EXT1-201ENST00000378204 8270 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PTPN4P29074 RGMA-202ENST00000425933 3078 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
PTPN4P29074 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PTPN4P29074 ACE-201ENST00000290863 2479 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
PTPN4P29074 AGBL3-202ENST00000435976 2495 ntTSL 5 BASIC15.23■□□□□ 0.03
PTPN4P29074 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PTPN4P29074 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
PTPN4P29074 CICP8-201ENST00000455800 2813 ntBASIC15.23■□□□□ 0.03
PTPN4P29074 SOAT1-203ENST00000539888 6794 ntTSL 2 BASIC15.23■□□□□ 0.03
PTPN4P29074 SYNGAP1-203ENST00000428982 4339 ntTSL 5 BASIC15.23■□□□□ 0.03
PTPN4P29074 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC15.23■□□□□ 0.03
PTPN4P29074 INF2-203ENST00000392634 4672 ntAPPRIS P3 TSL 5 BASIC15.23■□□□□ 0.03
PTPN4P29074 TDRD5-204ENST00000444136 3946 ntAPPRIS ALT1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PTPN4P29074 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC15.23■□□□□ 0.03
PTPN4P29074 TRAK1-203ENST00000396175 5033 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
PTPN4P29074 ZW10-201ENST00000200135 2992 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PTPN4P29074 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC15.23■□□□□ 0.03
PTPN4P29074 AC089987.1-201ENST00000551654 2209 ntBASIC15.23■□□□□ 0.03
PTPN4P29074 SNX14-203ENST00000369627 3111 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
PTPN4P29074 NF2-205ENST00000361452 5884 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
PTPN4P29074 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC15.23■□□□□ 0.03
PTPN4P29074 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PTPN4P29074 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
PTPN4P29074 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms