Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SMARCA1P28370 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
SMARCA1P28370 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SMARCA1P28370 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
SMARCA1P28370 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC17.19■□□□□ 0.34
SMARCA1P28370 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
SMARCA1P28370 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SMARCA1P28370 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SMARCA1P28370 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC17.19■□□□□ 0.34
SMARCA1P28370 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC17.19■□□□□ 0.34
SMARCA1P28370 LINC01694-201ENST00000424569 821 ntTSL 5 BASIC17.19■□□□□ 0.34
SMARCA1P28370 LINC01762-204ENST00000434879 436 ntTSL 2 BASIC17.19■□□□□ 0.34
SMARCA1P28370 HSPB1P2-201ENST00000448722 546 ntBASIC17.19■□□□□ 0.34
SMARCA1P28370 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
SMARCA1P28370 AC000032.1-201ENST00000562538 491 ntTSL 2 BASIC17.19■□□□□ 0.34
SMARCA1P28370 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC17.19■□□□□ 0.34
SMARCA1P28370 CYBA-208ENST00000567174 1085 ntTSL 2 BASIC17.19■□□□□ 0.34
SMARCA1P28370 AP002360.2-202ENST00000572035 738 ntTSL 3 BASIC17.19■□□□□ 0.34
SMARCA1P28370 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
SMARCA1P28370 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
SMARCA1P28370 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC17.19■□□□□ 0.34
SMARCA1P28370 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC17.19■□□□□ 0.34
SMARCA1P28370 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
SMARCA1P28370 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
SMARCA1P28370 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
SMARCA1P28370 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC17.19■□□□□ 0.34
SMARCA1P28370 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SMARCA1P28370 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC17.19■□□□□ 0.34
SMARCA1P28370 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
SMARCA1P28370 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SMARCA1P28370 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
SMARCA1P28370 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
SMARCA1P28370 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC17.18■□□□□ 0.34
SMARCA1P28370 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
SMARCA1P28370 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC17.18■□□□□ 0.34
SMARCA1P28370 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC17.18■□□□□ 0.34
SMARCA1P28370 AC018529.2-202ENST00000611482 3087 ntBASIC17.18■□□□□ 0.34
SMARCA1P28370 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
SMARCA1P28370 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
SMARCA1P28370 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC17.18■□□□□ 0.34
SMARCA1P28370 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
SMARCA1P28370 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
SMARCA1P28370 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SMARCA1P28370 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
SMARCA1P28370 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SMARCA1P28370 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SMARCA1P28370 LAMA4-203ENST00000368638 1061 ntTSL 2 BASIC17.18■□□□□ 0.34
SMARCA1P28370 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SMARCA1P28370 MIR1908-201ENST00000410394 80 ntBASIC17.18■□□□□ 0.34
SMARCA1P28370 BTBD6P1-201ENST00000412176 1267 ntBASIC17.18■□□□□ 0.34
SMARCA1P28370 LINC01665-201ENST00000422917 1241 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
SMARCA1P28370 AL354877.1-201ENST00000424412 413 ntBASIC17.18■□□□□ 0.34
SMARCA1P28370 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC17.18■□□□□ 0.34
SMARCA1P28370 RPL35A-205ENST00000448864 549 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SMARCA1P28370 AL035414.1-201ENST00000451327 857 ntBASIC17.18■□□□□ 0.34
SMARCA1P28370 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
SMARCA1P28370 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC17.18■□□□□ 0.34
SMARCA1P28370 AC103988.2-201ENST00000561804 725 ntBASIC17.18■□□□□ 0.34
SMARCA1P28370 DUX4L46-201ENST00000566845 751 ntBASIC17.18■□□□□ 0.34
SMARCA1P28370 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
SMARCA1P28370 THAP4-206ENST00000612200 969 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
SMARCA1P28370 PRRC2B-210ENST00000638390 1084 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
SMARCA1P28370 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
SMARCA1P28370 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
SMARCA1P28370 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
SMARCA1P28370 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SMARCA1P28370 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SMARCA1P28370 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SMARCA1P28370 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
SMARCA1P28370 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
SMARCA1P28370 TNRC18P2-201ENST00000417666 2714 ntBASIC17.18■□□□□ 0.34
SMARCA1P28370 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC17.17■□□□□ 0.34
SMARCA1P28370 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC17.17■□□□□ 0.34
SMARCA1P28370 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC17.17■□□□□ 0.34
SMARCA1P28370 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC17.17■□□□□ 0.34
SMARCA1P28370 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SMARCA1P28370 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SMARCA1P28370 AK6-201ENST00000380818 1183 ntTSL 2 BASIC17.17■□□□□ 0.34
SMARCA1P28370 MTX1P1-201ENST00000440904 838 ntBASIC17.17■□□□□ 0.34
SMARCA1P28370 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC17.17■□□□□ 0.34
SMARCA1P28370 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC17.17■□□□□ 0.34
SMARCA1P28370 ERICH5-202ENST00000545282 596 ntAPPRIS ALT2 TSL 2 BASIC17.17■□□□□ 0.34
SMARCA1P28370 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC17.17■□□□□ 0.34
SMARCA1P28370 AC139099.3-201ENST00000572850 472 ntTSL 5 BASIC17.17■□□□□ 0.34
SMARCA1P28370 AC008403.1-201ENST00000595676 443 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
SMARCA1P28370 PLA2G4C-AS1-201ENST00000596552 568 ntTSL 3 BASIC17.17■□□□□ 0.34
SMARCA1P28370 KLK11-210ENST00000600362 759 ntTSL 3 BASIC17.17■□□□□ 0.34
SMARCA1P28370 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SMARCA1P28370 AL136301.1-201ENST00000615830 422 ntBASIC17.17■□□□□ 0.34
SMARCA1P28370 MVK-217ENST00000639206 367 ntTSL 5 BASIC17.17■□□□□ 0.34
SMARCA1P28370 AL590440.2-201ENST00000641973 1595 ntBASIC17.17■□□□□ 0.34
SMARCA1P28370 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
SMARCA1P28370 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC17.17■□□□□ 0.34
SMARCA1P28370 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
SMARCA1P28370 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC17.17■□□□□ 0.34
SMARCA1P28370 CICP14-201ENST00000629111 2732 ntBASIC17.17■□□□□ 0.34
SMARCA1P28370 CASP6-202ENST00000352981 1347 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
SMARCA1P28370 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
SMARCA1P28370 CASK-202ENST00000378158 3848 ntTSL 5 BASIC17.17■□□□□ 0.34
SMARCA1P28370 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 62.5 ms