Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
BDNFP23560 AC126177.1-201ENST00000547829 2218 ntBASIC15.87■□□□□ 0.13
BDNFP23560 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC15.87■□□□□ 0.13
BDNFP23560 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC15.87■□□□□ 0.13
BDNFP23560 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC15.87■□□□□ 0.13
BDNFP23560 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
BDNFP23560 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
BDNFP23560 RUFY2-202ENST00000342616 983 ntTSL 2 BASIC15.87■□□□□ 0.13
BDNFP23560 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC15.87■□□□□ 0.13
BDNFP23560 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
BDNFP23560 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
BDNFP23560 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
BDNFP23560 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
BDNFP23560 BTBD6P1-201ENST00000412176 1267 ntBASIC15.87■□□□□ 0.13
BDNFP23560 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC15.87■□□□□ 0.13
BDNFP23560 MTX1P1-201ENST00000440904 838 ntBASIC15.87■□□□□ 0.13
BDNFP23560 CCDC153-204ENST00000503566 1295 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
BDNFP23560 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC15.87■□□□□ 0.13
BDNFP23560 KLK3-211ENST00000597483 810 ntTSL 2 BASIC15.87■□□□□ 0.13
BDNFP23560 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC15.87■□□□□ 0.13
BDNFP23560 ZACNP1-201ENST00000612259 710 ntBASIC15.87■□□□□ 0.13
BDNFP23560 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
BDNFP23560 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
BDNFP23560 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
BDNFP23560 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
BDNFP23560 AC011840.2-201ENST00000563063 1520 ntBASIC15.87■□□□□ 0.13
BDNFP23560 AC015818.8-201ENST00000587907 1519 ntBASIC15.87■□□□□ 0.13
BDNFP23560 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC15.87■□□□□ 0.13
BDNFP23560 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC15.87■□□□□ 0.13
BDNFP23560 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC15.87■□□□□ 0.13
BDNFP23560 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC15.87■□□□□ 0.13
BDNFP23560 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC15.87■□□□□ 0.13
BDNFP23560 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
BDNFP23560 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
BDNFP23560 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC15.87■□□□□ 0.13
BDNFP23560 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
BDNFP23560 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC15.86■□□□□ 0.13
BDNFP23560 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC15.86■□□□□ 0.13
BDNFP23560 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
BDNFP23560 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
BDNFP23560 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
BDNFP23560 AP000593.2-201ENST00000542775 1433 ntBASIC15.86■□□□□ 0.13
BDNFP23560 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
BDNFP23560 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
BDNFP23560 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC15.86■□□□□ 0.13
BDNFP23560 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC15.86■□□□□ 0.13
BDNFP23560 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC15.86■□□□□ 0.13
BDNFP23560 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
BDNFP23560 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC15.86■□□□□ 0.13
BDNFP23560 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
BDNFP23560 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC15.86■□□□□ 0.13
BDNFP23560 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
BDNFP23560 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC15.86■□□□□ 0.13
BDNFP23560 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
BDNFP23560 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
BDNFP23560 ZNF750-202ENST00000572562 1513 ntTSL 2 BASIC15.86■□□□□ 0.13
BDNFP23560 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
BDNFP23560 PRM2-201ENST00000241808 680 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
BDNFP23560 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC15.86■□□□□ 0.13
BDNFP23560 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
BDNFP23560 KLK8-204ENST00000391806 1051 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
BDNFP23560 TISP43-201ENST00000409793 538 ntTSL 4 BASIC15.86■□□□□ 0.13
BDNFP23560 AC004945.1-201ENST00000416738 983 ntBASIC15.86■□□□□ 0.13
BDNFP23560 LINC01665-201ENST00000422917 1241 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
BDNFP23560 EPDR1-203ENST00000425345 947 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
BDNFP23560 PRM2-202ENST00000435245 723 ntAPPRIS ALT2 TSL 2 BASIC15.86■□□□□ 0.13
BDNFP23560 PFN1P12-201ENST00000455938 534 ntBASIC15.86■□□□□ 0.13
BDNFP23560 CHIA-209ENST00000483391 1188 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
BDNFP23560 SNHG12-210ENST00000483436 682 ntTSL 3 BASIC15.86■□□□□ 0.13
BDNFP23560 RPSAP36-202ENST00000494591 1261 ntBASIC15.86■□□□□ 0.13
BDNFP23560 AC020659.2-202ENST00000512295 513 ntTSL 2 BASIC15.86■□□□□ 0.13
BDNFP23560 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
BDNFP23560 AP003096.1-203ENST00000564469 563 ntTSL 3 BASIC15.86■□□□□ 0.13
BDNFP23560 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC15.86■□□□□ 0.13
BDNFP23560 MIR4683-201ENST00000579659 81 ntBASIC15.86■□□□□ 0.13
BDNFP23560 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC15.86■□□□□ 0.13
BDNFP23560 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC15.86■□□□□ 0.13
BDNFP23560 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC15.86■□□□□ 0.13
BDNFP23560 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC15.86■□□□□ 0.13
BDNFP23560 MIR6869-201ENST00000619434 62 ntBASIC15.86■□□□□ 0.13
BDNFP23560 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC15.86■□□□□ 0.13
BDNFP23560 AGAP7P-201ENST00000582299 2062 ntBASIC15.86■□□□□ 0.13
BDNFP23560 AGAP14-201ENST00000624701 2060 ntBASIC15.86■□□□□ 0.13
BDNFP23560 VSIG10L-201ENST00000335624 3397 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
BDNFP23560 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC15.86■□□□□ 0.13
BDNFP23560 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC15.86■□□□□ 0.13
BDNFP23560 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
BDNFP23560 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
BDNFP23560 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
BDNFP23560 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
BDNFP23560 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
BDNFP23560 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
BDNFP23560 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
BDNFP23560 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
BDNFP23560 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
BDNFP23560 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
BDNFP23560 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
BDNFP23560 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC15.86■□□□□ 0.13
BDNFP23560 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC15.86■□□□□ 0.13
BDNFP23560 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 53.1 ms