Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 BASP1P1-201ENST00000430708 665 ntBASIC14.78□□□□□ -0.04
SIX3O95343 AC244107.1-201ENST00000442033 332 ntBASIC14.78□□□□□ -0.04
SIX3O95343 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC14.78□□□□□ -0.04
SIX3O95343 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC14.78□□□□□ -0.04
SIX3O95343 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC14.78□□□□□ -0.04
SIX3O95343 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC14.78□□□□□ -0.04
SIX3O95343 DUT-210ENST00000559935 569 ntTSL 3 BASIC14.78□□□□□ -0.04
SIX3O95343 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC14.78□□□□□ -0.04
SIX3O95343 MINPP1-202ENST00000371996 2415 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
SIX3O95343 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
SIX3O95343 GAS2L1-209ENST00000618518 3382 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
SIX3O95343 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
SIX3O95343 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
SIX3O95343 CHL1-202ENST00000397491 5235 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
SIX3O95343 CAMK1D-204ENST00000619168 8153 ntAPPRIS P4 TSL 1 (best) BASIC14.78□□□□□ -0.04
SIX3O95343 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
SIX3O95343 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
SIX3O95343 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
SIX3O95343 AC005523.2-201ENST00000601192 3568 ntTSL 4 BASIC14.78□□□□□ -0.04
SIX3O95343 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
SIX3O95343 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
SIX3O95343 LINC00475-202ENST00000416438 2506 ntTSL 2 BASIC14.77□□□□□ -0.04
SIX3O95343 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.04
SIX3O95343 AC005840.4-201ENST00000541242 2494 ntBASIC14.77□□□□□ -0.04
SIX3O95343 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC14.77□□□□□ -0.04
SIX3O95343 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC14.77□□□□□ -0.04
SIX3O95343 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
SIX3O95343 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
SIX3O95343 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC14.77□□□□□ -0.04
SIX3O95343 SPOCK3-201ENST00000357154 2986 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.04
SIX3O95343 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
SIX3O95343 SEPT7-201ENST00000350320 4350 ntAPPRIS P5 TSL 5 BASIC14.77□□□□□ -0.04
SIX3O95343 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.04
SIX3O95343 MAN1B1-202ENST00000371589 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
SIX3O95343 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC14.77□□□□□ -0.04
SIX3O95343 CLEC16A-203ENST00000409790 6891 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.04
SIX3O95343 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.04
SIX3O95343 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC14.77□□□□□ -0.04
SIX3O95343 SIGLEC9-202ENST00000440804 1960 ntAPPRIS ALT2 TSL 2 BASIC14.77□□□□□ -0.04
SIX3O95343 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC14.77□□□□□ -0.04
SIX3O95343 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
SIX3O95343 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.05
SIX3O95343 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC14.77□□□□□ -0.05
SIX3O95343 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
SIX3O95343 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC14.77□□□□□ -0.05
SIX3O95343 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC14.77□□□□□ -0.05
SIX3O95343 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
SIX3O95343 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC14.77□□□□□ -0.05
SIX3O95343 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC14.77□□□□□ -0.05
SIX3O95343 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC14.77□□□□□ -0.05
SIX3O95343 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC14.77□□□□□ -0.05
SIX3O95343 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC14.77□□□□□ -0.05
SIX3O95343 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC14.77□□□□□ -0.05
SIX3O95343 BRI3BPP1-201ENST00000594224 787 ntBASIC14.77□□□□□ -0.05
SIX3O95343 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
SIX3O95343 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC14.77□□□□□ -0.05
SIX3O95343 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC14.77□□□□□ -0.05
SIX3O95343 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC14.77□□□□□ -0.05
SIX3O95343 ZNF655-201ENST00000252713 2535 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.05
SIX3O95343 KCNT1-209ENST00000490355 3708 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.05
SIX3O95343 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
SIX3O95343 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
SIX3O95343 RTEL1-201ENST00000318100 4676 ntTSL 2 BASIC14.77□□□□□ -0.05
SIX3O95343 NDFIP2-201ENST00000218652 4625 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
SIX3O95343 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
SIX3O95343 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
SIX3O95343 DCUN1D3-201ENST00000324344 6162 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
SIX3O95343 TSPAN18-207ENST00000520358 3316 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.05
SIX3O95343 CACNA2D1-201ENST00000356253 3858 ntTSL 5 BASIC14.77□□□□□ -0.05
SIX3O95343 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC14.77□□□□□ -0.05
SIX3O95343 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.05
SIX3O95343 ZNF664-202ENST00000392404 4262 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
SIX3O95343 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC14.77□□□□□ -0.05
SIX3O95343 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.05
SIX3O95343 NUP54-217ENST00000514987 1563 ntTSL 2 BASIC14.77□□□□□ -0.05
SIX3O95343 TMEM117-207ENST00000551577 2643 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
SIX3O95343 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC14.77□□□□□ -0.05
SIX3O95343 GRID2IP-203ENST00000457091 3636 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.05
SIX3O95343 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
SIX3O95343 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC14.76□□□□□ -0.05
SIX3O95343 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
SIX3O95343 KLF11-205ENST00000535335 4033 ntAPPRIS ALT2 TSL 2 BASIC14.76□□□□□ -0.05
SIX3O95343 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
SIX3O95343 SYT9-201ENST00000318881 3955 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
SIX3O95343 ENDOD1-201ENST00000278505 4687 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
SIX3O95343 GPR132-203ENST00000539291 2779 ntAPPRIS P3 TSL 2 BASIC14.76□□□□□ -0.05
SIX3O95343 RRP1B-201ENST00000340648 5090 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
SIX3O95343 NPRL3-212ENST00000620134 3203 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
SIX3O95343 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC14.76□□□□□ -0.05
SIX3O95343 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
SIX3O95343 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC14.76□□□□□ -0.05
SIX3O95343 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
SIX3O95343 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
SIX3O95343 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
SIX3O95343 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
SIX3O95343 AL645937.2-201ENST00000396808 931 ntBASIC14.76□□□□□ -0.05
SIX3O95343 MPV17-208ENST00000405076 603 ntTSL 5 BASIC14.76□□□□□ -0.05
SIX3O95343 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
SIX3O95343 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
SIX3O95343 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC14.76□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 51 ms