Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC17.79■□□□□ 0.44
LIMCH1Q9UPQ0 OSM-203ENST00000403463 464 ntTSL 3 BASIC17.79■□□□□ 0.44
LIMCH1Q9UPQ0 LSM5-207ENST00000410044 687 ntTSL 3 BASIC17.79■□□□□ 0.44
LIMCH1Q9UPQ0 AC134915.1-201ENST00000426461 574 ntBASIC17.79■□□□□ 0.44
LIMCH1Q9UPQ0 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC17.79■□□□□ 0.44
LIMCH1Q9UPQ0 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC17.79■□□□□ 0.44
LIMCH1Q9UPQ0 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC17.79■□□□□ 0.44
LIMCH1Q9UPQ0 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC17.79■□□□□ 0.44
LIMCH1Q9UPQ0 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC17.79■□□□□ 0.44
LIMCH1Q9UPQ0 AC093214.1-201ENST00000511688 1107 ntBASIC17.79■□□□□ 0.44
LIMCH1Q9UPQ0 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
LIMCH1Q9UPQ0 SPDYE22P-201ENST00000582158 798 ntBASIC17.79■□□□□ 0.44
LIMCH1Q9UPQ0 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC17.79■□□□□ 0.44
LIMCH1Q9UPQ0 AC099568.2-201ENST00000609194 695 ntBASIC17.79■□□□□ 0.44
LIMCH1Q9UPQ0 AC007431.3-201ENST00000623221 587 ntBASIC17.79■□□□□ 0.44
LIMCH1Q9UPQ0 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LIMCH1Q9UPQ0 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
LIMCH1Q9UPQ0 ADGRG2-207ENST00000379869 4768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
LIMCH1Q9UPQ0 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC17.79■□□□□ 0.44
LIMCH1Q9UPQ0 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LIMCH1Q9UPQ0 AC152010.1-201ENST00000415779 2006 ntBASIC17.79■□□□□ 0.44
LIMCH1Q9UPQ0 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
LIMCH1Q9UPQ0 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LIMCH1Q9UPQ0 ATE1-203ENST00000369043 4900 ntAPPRIS ALT1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LIMCH1Q9UPQ0 TPO-201ENST00000329066 3138 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
LIMCH1Q9UPQ0 MICAL1-201ENST00000358577 3142 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
LIMCH1Q9UPQ0 AC126755.1-201ENST00000525846 6405 ntBASIC17.78■□□□□ 0.44
LIMCH1Q9UPQ0 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
LIMCH1Q9UPQ0 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC17.78■□□□□ 0.44
LIMCH1Q9UPQ0 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC17.78■□□□□ 0.44
LIMCH1Q9UPQ0 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC17.78■□□□□ 0.44
LIMCH1Q9UPQ0 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC17.78■□□□□ 0.44
LIMCH1Q9UPQ0 SLC22A15-202ENST00000369503 4720 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
LIMCH1Q9UPQ0 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC17.78■□□□□ 0.44
LIMCH1Q9UPQ0 RDX-218ENST00000544551 4117 ntTSL 2 BASIC17.78■□□□□ 0.44
LIMCH1Q9UPQ0 MINPP1-202ENST00000371996 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
LIMCH1Q9UPQ0 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
LIMCH1Q9UPQ0 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC17.78■□□□□ 0.44
LIMCH1Q9UPQ0 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
LIMCH1Q9UPQ0 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
LIMCH1Q9UPQ0 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC17.78■□□□□ 0.44
LIMCH1Q9UPQ0 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC17.78■□□□□ 0.44
LIMCH1Q9UPQ0 AC093004.1-201ENST00000508850 424 ntBASIC17.78■□□□□ 0.44
LIMCH1Q9UPQ0 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
LIMCH1Q9UPQ0 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
LIMCH1Q9UPQ0 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC17.78■□□□□ 0.44
LIMCH1Q9UPQ0 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
LIMCH1Q9UPQ0 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC17.78■□□□□ 0.44
LIMCH1Q9UPQ0 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC17.78■□□□□ 0.44
LIMCH1Q9UPQ0 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC17.78■□□□□ 0.44
LIMCH1Q9UPQ0 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC17.78■□□□□ 0.44
LIMCH1Q9UPQ0 APCDD1L-201ENST00000371149 3426 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
LIMCH1Q9UPQ0 CYB561-201ENST00000360793 3001 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
LIMCH1Q9UPQ0 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC17.78■□□□□ 0.44
LIMCH1Q9UPQ0 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC17.78■□□□□ 0.44
LIMCH1Q9UPQ0 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
LIMCH1Q9UPQ0 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
LIMCH1Q9UPQ0 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
LIMCH1Q9UPQ0 ZFAND6-222ENST00000613266 1729 ntAPPRIS P1 TSL 3 BASIC17.78■□□□□ 0.44
LIMCH1Q9UPQ0 MAGIX-208ENST00000616266 3295 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
LIMCH1Q9UPQ0 COQ7-209ENST00000569127 2575 ntTSL 2 BASIC17.78■□□□□ 0.44
LIMCH1Q9UPQ0 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
LIMCH1Q9UPQ0 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC17.78■□□□□ 0.44
LIMCH1Q9UPQ0 IFNAR1-201ENST00000270139 6139 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
LIMCH1Q9UPQ0 IL6R-201ENST00000344086 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
LIMCH1Q9UPQ0 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
LIMCH1Q9UPQ0 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC17.77■□□□□ 0.44
LIMCH1Q9UPQ0 ZNF655-201ENST00000252713 2535 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
LIMCH1Q9UPQ0 OR2I1P-209ENST00000641730 5365 ntBASIC17.77■□□□□ 0.44
LIMCH1Q9UPQ0 SLC7A8-212ENST00000529705 1819 ntTSL 2 BASIC17.77■□□□□ 0.44
LIMCH1Q9UPQ0 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC17.77■□□□□ 0.44
LIMCH1Q9UPQ0 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC17.77■□□□□ 0.44
LIMCH1Q9UPQ0 CDKN1A-208ENST00000615513 2102 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
LIMCH1Q9UPQ0 RSPRY1-202ENST00000537866 3586 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
LIMCH1Q9UPQ0 AC104452.1-203ENST00000636166 2266 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
LIMCH1Q9UPQ0 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
LIMCH1Q9UPQ0 IPO8-201ENST00000256079 5325 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
LIMCH1Q9UPQ0 ASTN2-206ENST00000361477 4001 ntTSL 5 BASIC17.77■□□□□ 0.44
LIMCH1Q9UPQ0 CLK4-201ENST00000316308 2568 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
LIMCH1Q9UPQ0 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC17.77■□□□□ 0.44
LIMCH1Q9UPQ0 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC17.77■□□□□ 0.44
LIMCH1Q9UPQ0 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
LIMCH1Q9UPQ0 SEZ6L-202ENST00000343706 2898 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
LIMCH1Q9UPQ0 AGGF1P1-201ENST00000509500 2073 ntBASIC17.77■□□□□ 0.44
LIMCH1Q9UPQ0 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
LIMCH1Q9UPQ0 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
LIMCH1Q9UPQ0 BRF1-202ENST00000379932 884 ntTSL 5 BASIC17.77■□□□□ 0.44
LIMCH1Q9UPQ0 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC17.77■□□□□ 0.44
LIMCH1Q9UPQ0 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC17.77■□□□□ 0.44
LIMCH1Q9UPQ0 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC17.77■□□□□ 0.44
LIMCH1Q9UPQ0 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC17.77■□□□□ 0.44
LIMCH1Q9UPQ0 AC022447.6-201ENST00000515522 438 ntBASIC17.77■□□□□ 0.44
LIMCH1Q9UPQ0 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC17.77■□□□□ 0.44
LIMCH1Q9UPQ0 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC17.77■□□□□ 0.44
LIMCH1Q9UPQ0 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC17.77■□□□□ 0.44
LIMCH1Q9UPQ0 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC17.77■□□□□ 0.44
LIMCH1Q9UPQ0 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
LIMCH1Q9UPQ0 RPS6KL1-210ENST00000555647 3309 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
LIMCH1Q9UPQ0 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
LIMCH1Q9UPQ0 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 44.3 ms