Protein–RNA interactions for Protein: Q9P1Z3

HCN3, Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 3, humanhuman

Predictions only

Length 774 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HCN3Q9P1Z3 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
HCN3Q9P1Z3 MICAL1-201ENST00000358577 3142 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
HCN3Q9P1Z3 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
HCN3Q9P1Z3 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
HCN3Q9P1Z3 OR2I1P-209ENST00000641730 5365 ntBASIC14.43□□□□□ -0.1
HCN3Q9P1Z3 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
HCN3Q9P1Z3 AC104581.4-201ENST00000623126 3052 ntBASIC14.43□□□□□ -0.1
HCN3Q9P1Z3 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
HCN3Q9P1Z3 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
HCN3Q9P1Z3 AC006058.4-201ENST00000624016 1670 ntBASIC14.43□□□□□ -0.1
HCN3Q9P1Z3 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
HCN3Q9P1Z3 ZEB1-AS1-208ENST00000607166 2503 ntBASIC14.43□□□□□ -0.1
HCN3Q9P1Z3 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC14.43□□□□□ -0.1
HCN3Q9P1Z3 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
HCN3Q9P1Z3 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
HCN3Q9P1Z3 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
HCN3Q9P1Z3 AL645937.2-201ENST00000396808 931 ntBASIC14.43□□□□□ -0.1
HCN3Q9P1Z3 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC14.43□□□□□ -0.1
HCN3Q9P1Z3 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC14.43□□□□□ -0.1
HCN3Q9P1Z3 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
HCN3Q9P1Z3 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC14.43□□□□□ -0.1
HCN3Q9P1Z3 AC114812.1-204ENST00000449669 728 ntBASIC14.43□□□□□ -0.1
HCN3Q9P1Z3 FTH1P14-201ENST00000482930 551 ntBASIC14.43□□□□□ -0.1
HCN3Q9P1Z3 IGHV3-71-201ENST00000523324 359 ntBASIC14.43□□□□□ -0.1
HCN3Q9P1Z3 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC14.43□□□□□ -0.1
HCN3Q9P1Z3 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC14.43□□□□□ -0.1
HCN3Q9P1Z3 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC14.43□□□□□ -0.1
HCN3Q9P1Z3 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC14.43□□□□□ -0.1
HCN3Q9P1Z3 AC106886.1-201ENST00000568660 600 ntBASIC14.43□□□□□ -0.1
HCN3Q9P1Z3 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC14.43□□□□□ -0.1
HCN3Q9P1Z3 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC14.43□□□□□ -0.1
HCN3Q9P1Z3 AC145423.3-201ENST00000615987 467 ntBASIC14.43□□□□□ -0.1
HCN3Q9P1Z3 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC14.43□□□□□ -0.1
HCN3Q9P1Z3 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC14.43□□□□□ -0.1
HCN3Q9P1Z3 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
HCN3Q9P1Z3 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
HCN3Q9P1Z3 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
HCN3Q9P1Z3 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC14.43□□□□□ -0.1
HCN3Q9P1Z3 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
HCN3Q9P1Z3 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
HCN3Q9P1Z3 ZNF280D-207ENST00000559237 4902 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
HCN3Q9P1Z3 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
HCN3Q9P1Z3 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC14.43□□□□□ -0.1
HCN3Q9P1Z3 AC012508.2-201ENST00000567613 1472 ntBASIC14.43□□□□□ -0.1
HCN3Q9P1Z3 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
HCN3Q9P1Z3 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC14.43□□□□□ -0.1
HCN3Q9P1Z3 APC2-201ENST00000233607 10151 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
HCN3Q9P1Z3 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
HCN3Q9P1Z3 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC14.43□□□□□ -0.1
HCN3Q9P1Z3 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC14.43□□□□□ -0.1
HCN3Q9P1Z3 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC14.43□□□□□ -0.1
HCN3Q9P1Z3 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC14.42□□□□□ -0.1
HCN3Q9P1Z3 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HCN3Q9P1Z3 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HCN3Q9P1Z3 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HCN3Q9P1Z3 IRF4-201ENST00000380956 5331 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HCN3Q9P1Z3 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
HCN3Q9P1Z3 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HCN3Q9P1Z3 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC14.42□□□□□ -0.1
HCN3Q9P1Z3 ACTN2-206ENST00000542672 4906 ntAPPRIS ALT1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HCN3Q9P1Z3 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC14.42□□□□□ -0.1
HCN3Q9P1Z3 IRF2BP2-201ENST00000366609 4663 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
HCN3Q9P1Z3 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
HCN3Q9P1Z3 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC14.42□□□□□ -0.1
HCN3Q9P1Z3 FAM84B-201ENST00000304916 5404 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HCN3Q9P1Z3 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC14.42□□□□□ -0.1
HCN3Q9P1Z3 SETD1B-203ENST00000604567 5969 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
HCN3Q9P1Z3 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC14.42□□□□□ -0.1
HCN3Q9P1Z3 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HCN3Q9P1Z3 RPS15-201ENST00000233609 534 ntTSL 2 BASIC14.42□□□□□ -0.1
HCN3Q9P1Z3 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC14.42□□□□□ -0.1
HCN3Q9P1Z3 AC092933.1-201ENST00000393644 945 ntBASIC14.42□□□□□ -0.1
HCN3Q9P1Z3 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
HCN3Q9P1Z3 ACTBP8-201ENST00000403258 1108 ntBASIC14.42□□□□□ -0.1
HCN3Q9P1Z3 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
HCN3Q9P1Z3 ARSEP1-201ENST00000420443 635 ntBASIC14.42□□□□□ -0.1
HCN3Q9P1Z3 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC14.42□□□□□ -0.1
HCN3Q9P1Z3 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC14.42□□□□□ -0.1
HCN3Q9P1Z3 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC14.42□□□□□ -0.1
HCN3Q9P1Z3 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC14.42□□□□□ -0.1
HCN3Q9P1Z3 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC14.42□□□□□ -0.1
HCN3Q9P1Z3 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC14.42□□□□□ -0.1
HCN3Q9P1Z3 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
HCN3Q9P1Z3 APRT-204ENST00000563655 709 ntTSL 5 BASIC14.42□□□□□ -0.1
HCN3Q9P1Z3 RPS15-205ENST00000586686 562 ntTSL 5 BASIC14.42□□□□□ -0.1
HCN3Q9P1Z3 RPS15-208ENST00000591804 711 ntTSL 5 BASIC14.42□□□□□ -0.1
HCN3Q9P1Z3 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
HCN3Q9P1Z3 AC244669.2-201ENST00000612320 853 ntBASIC14.42□□□□□ -0.1
HCN3Q9P1Z3 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC14.42□□□□□ -0.1
HCN3Q9P1Z3 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC14.42□□□□□ -0.1
HCN3Q9P1Z3 PRSS30P-206ENST00000641773 873 ntBASIC14.42□□□□□ -0.1
HCN3Q9P1Z3 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
HCN3Q9P1Z3 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC14.42□□□□□ -0.1
HCN3Q9P1Z3 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
HCN3Q9P1Z3 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
HCN3Q9P1Z3 AP000845.1-201ENST00000581677 2131 ntBASIC14.42□□□□□ -0.1
HCN3Q9P1Z3 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HCN3Q9P1Z3 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC14.42□□□□□ -0.1
HCN3Q9P1Z3 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC14.42□□□□□ -0.1
HCN3Q9P1Z3 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC14.42□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 43.2 ms