Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC17.26■□□□□ 0.35
USP28Q96RU2 AL359711.2-201ENST00000563105 872 ntBASIC17.26■□□□□ 0.35
USP28Q96RU2 NAA60-208ENST00000570819 833 ntTSL 2 BASIC17.26■□□□□ 0.35
USP28Q96RU2 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC17.26■□□□□ 0.35
USP28Q96RU2 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC17.26■□□□□ 0.35
USP28Q96RU2 AC099568.2-201ENST00000609194 695 ntBASIC17.26■□□□□ 0.35
USP28Q96RU2 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC17.26■□□□□ 0.35
USP28Q96RU2 ORC5-208ENST00000626700 344 ntTSL 3 BASIC17.26■□□□□ 0.35
USP28Q96RU2 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC17.26■□□□□ 0.35
USP28Q96RU2 KRT8P22-201ENST00000562317 1415 ntBASIC17.26■□□□□ 0.35
USP28Q96RU2 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
USP28Q96RU2 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
USP28Q96RU2 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
USP28Q96RU2 ZBED8-202ENST00000523213 2484 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
USP28Q96RU2 AMACR-203ENST00000382072 2919 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
USP28Q96RU2 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC17.26■□□□□ 0.35
USP28Q96RU2 CDKN1A-208ENST00000615513 2102 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
USP28Q96RU2 BTN1A1-201ENST00000244513 2895 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
USP28Q96RU2 TRAF3-202ENST00000351691 2239 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
USP28Q96RU2 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
USP28Q96RU2 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
USP28Q96RU2 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
USP28Q96RU2 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
USP28Q96RU2 PRSS30P-203ENST00000476276 2855 ntTSL 2 BASIC17.25■□□□□ 0.35
USP28Q96RU2 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
USP28Q96RU2 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
USP28Q96RU2 PLA2G16-201ENST00000323646 2594 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
USP28Q96RU2 BANP-203ENST00000393207 2438 ntTSL 2 BASIC17.25■□□□□ 0.35
USP28Q96RU2 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
USP28Q96RU2 C1QBPP1-201ENST00000400117 770 ntBASIC17.25■□□□□ 0.35
USP28Q96RU2 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC17.25■□□□□ 0.35
USP28Q96RU2 LSM5-207ENST00000410044 687 ntTSL 3 BASIC17.25■□□□□ 0.35
USP28Q96RU2 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC17.25■□□□□ 0.35
USP28Q96RU2 AC093004.1-201ENST00000508850 424 ntBASIC17.25■□□□□ 0.35
USP28Q96RU2 GLI4-203ENST00000517468 963 ntTSL 5 BASIC17.25■□□□□ 0.35
USP28Q96RU2 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
USP28Q96RU2 AP001582.1-201ENST00000525856 295 ntBASIC17.25■□□□□ 0.35
USP28Q96RU2 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC17.25■□□□□ 0.35
USP28Q96RU2 AL356805.1-201ENST00000556383 341 ntTSL 3 BASIC17.25■□□□□ 0.35
USP28Q96RU2 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC17.25■□□□□ 0.35
USP28Q96RU2 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC17.25■□□□□ 0.35
USP28Q96RU2 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC17.25■□□□□ 0.35
USP28Q96RU2 OSBPL7-211ENST00000613735 2836 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
USP28Q96RU2 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
USP28Q96RU2 CASC2-202ENST00000426021 3232 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
USP28Q96RU2 TDRD5-204ENST00000444136 3946 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
USP28Q96RU2 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC17.25■□□□□ 0.35
USP28Q96RU2 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
USP28Q96RU2 FAM186B-201ENST00000257894 2944 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
USP28Q96RU2 FRZB-201ENST00000295113 3162 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
USP28Q96RU2 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
USP28Q96RU2 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
USP28Q96RU2 TDG-209ENST00000544861 1387 ntTSL 2 BASIC17.25■□□□□ 0.35
USP28Q96RU2 TAF5-201ENST00000369839 3268 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
USP28Q96RU2 ZNF663P-201ENST00000400371 2722 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
USP28Q96RU2 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
USP28Q96RU2 ZNF256-201ENST00000282308 2172 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
USP28Q96RU2 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
USP28Q96RU2 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC17.25■□□□□ 0.35
USP28Q96RU2 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
USP28Q96RU2 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC17.24■□□□□ 0.35
USP28Q96RU2 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
USP28Q96RU2 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
USP28Q96RU2 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC17.24■□□□□ 0.35
USP28Q96RU2 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
USP28Q96RU2 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
USP28Q96RU2 SRSF8-201ENST00000587424 4028 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
USP28Q96RU2 AGGF1P1-201ENST00000509500 2073 ntBASIC17.24■□□□□ 0.35
USP28Q96RU2 PTGES3-207ENST00000614328 2077 ntTSL 3 BASIC17.24■□□□□ 0.35
USP28Q96RU2 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
USP28Q96RU2 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC17.24■□□□□ 0.35
USP28Q96RU2 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
USP28Q96RU2 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
USP28Q96RU2 MCRS1-211ENST00000550165 1936 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
USP28Q96RU2 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
USP28Q96RU2 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
USP28Q96RU2 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC17.24■□□□□ 0.35
USP28Q96RU2 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
USP28Q96RU2 RAC2-204ENST00000406508 893 ntTSL 5 BASIC17.24■□□□□ 0.35
USP28Q96RU2 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC17.24■□□□□ 0.35
USP28Q96RU2 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
USP28Q96RU2 SPTLC1P1-201ENST00000447199 261 ntBASIC17.24■□□□□ 0.35
USP28Q96RU2 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
USP28Q96RU2 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
USP28Q96RU2 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
USP28Q96RU2 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC17.24■□□□□ 0.35
USP28Q96RU2 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC17.24■□□□□ 0.35
USP28Q96RU2 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC17.24■□□□□ 0.35
USP28Q96RU2 LPO-210ENST00000582328 2680 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
USP28Q96RU2 MPZL1-203ENST00000392121 3421 ntTSL 2 BASIC17.24■□□□□ 0.35
USP28Q96RU2 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
USP28Q96RU2 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC17.24■□□□□ 0.35
USP28Q96RU2 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
USP28Q96RU2 CYP1A1-207ENST00000567032 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
USP28Q96RU2 PEX5L-215ENST00000485199 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
USP28Q96RU2 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
USP28Q96RU2 AC005523.2-201ENST00000601192 3568 ntTSL 4 BASIC17.24■□□□□ 0.35
USP28Q96RU2 AGER-206ENST00000375070 1463 ntTSL 5 BASIC17.24■□□□□ 0.35
USP28Q96RU2 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
USP28Q96RU2 CICP4-201ENST00000447359 2812 ntBASIC17.24■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms