Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC15.27■□□□□ 0.04
PTPN4P29074 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC15.27■□□□□ 0.04
PTPN4P29074 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC15.27■□□□□ 0.04
PTPN4P29074 SRP9-204ENST00000619790 377 ntTSL 2 BASIC15.27■□□□□ 0.04
PTPN4P29074 LAT2-205ENST00000460943 2527 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.03
PTPN4P29074 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
PTPN4P29074 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
PTPN4P29074 XKR5-201ENST00000618742 4893 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
PTPN4P29074 AC152010.1-201ENST00000415779 2006 ntBASIC15.27■□□□□ 0.03
PTPN4P29074 LINC00910-206ENST00000592135 2438 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
PTPN4P29074 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
PTPN4P29074 PAK2-201ENST00000327134 6139 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.03
PTPN4P29074 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC15.27■□□□□ 0.03
PTPN4P29074 CLEC16A-202ENST00000409552 3365 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
PTPN4P29074 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
PTPN4P29074 SAR1A-204ENST00000373241 2996 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
PTPN4P29074 OSMR-201ENST00000274276 5539 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
PTPN4P29074 GRM7-203ENST00000389336 2901 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.03
PTPN4P29074 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC15.27■□□□□ 0.03
PTPN4P29074 ISLR-202ENST00000395118 2175 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PTPN4P29074 C22orf34-204ENST00000414287 2197 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
PTPN4P29074 ANKRD13B-201ENST00000394859 3214 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
PTPN4P29074 CU639417.3-201ENST00000624240 1404 ntBASIC15.26■□□□□ 0.03
PTPN4P29074 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
PTPN4P29074 PTPRU-205ENST00000460170 5337 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
PTPN4P29074 PITPNM3-201ENST00000262483 7086 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
PTPN4P29074 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
PTPN4P29074 CEP164-201ENST00000278935 5630 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
PTPN4P29074 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC15.26■□□□□ 0.03
PTPN4P29074 NTRK2-201ENST00000277120 8633 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
PTPN4P29074 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
PTPN4P29074 CSRNP2-201ENST00000228515 4471 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PTPN4P29074 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC15.26■□□□□ 0.03
PTPN4P29074 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
PTPN4P29074 SCYL1-205ENST00000524944 2715 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
PTPN4P29074 HIST3H2BB-201ENST00000620438 2364 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
PTPN4P29074 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
PTPN4P29074 POU5F1B-201ENST00000465342 5360 ntAPPRIS P1 TSL 3 BASIC15.26■□□□□ 0.03
PTPN4P29074 ELFN2-207ENST00000613079 8360 ntAPPRIS P1 TSL 4 BASIC15.26■□□□□ 0.03
PTPN4P29074 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC15.26■□□□□ 0.03
PTPN4P29074 GOLGA2-212ENST00000609374 2973 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
PTPN4P29074 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
PTPN4P29074 BLK-201ENST00000259089 2606 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PTPN4P29074 MAGIX-208ENST00000616266 3295 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
PTPN4P29074 PREP-201ENST00000369110 2905 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PTPN4P29074 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
PTPN4P29074 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PTPN4P29074 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC15.26■□□□□ 0.03
PTPN4P29074 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PTPN4P29074 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
PTPN4P29074 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC15.26■□□□□ 0.03
PTPN4P29074 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
PTPN4P29074 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC15.26■□□□□ 0.03
PTPN4P29074 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC15.26■□□□□ 0.03
PTPN4P29074 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC15.26■□□□□ 0.03
PTPN4P29074 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC15.26■□□□□ 0.03
PTPN4P29074 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC15.26■□□□□ 0.03
PTPN4P29074 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
PTPN4P29074 AC092634.8-201ENST00000639687 773 ntTSL 5 BASIC15.26■□□□□ 0.03
PTPN4P29074 MAPK4-201ENST00000400384 4770 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PTPN4P29074 SGK2-204ENST00000373100 2225 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
PTPN4P29074 SLC9A7P1-202ENST00000556476 2239 ntBASIC15.26■□□□□ 0.03
PTPN4P29074 PITRM1-206ENST00000451104 3183 ntTSL 2 BASIC15.26■□□□□ 0.03
PTPN4P29074 SIDT1-201ENST00000264852 5080 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
PTPN4P29074 SLCO4C1-201ENST00000310954 5334 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PTPN4P29074 RLF-201ENST00000372771 6246 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PTPN4P29074 GGT5-202ENST00000327365 2494 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
PTPN4P29074 ARPC4-TTLL3-201ENST00000397256 2466 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
PTPN4P29074 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PTPN4P29074 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PTPN4P29074 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC15.26■□□□□ 0.03
PTPN4P29074 CDYL2-203ENST00000562812 2086 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
PTPN4P29074 CDYL2-204ENST00000563890 2086 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
PTPN4P29074 CDYL2-205ENST00000566173 2086 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
PTPN4P29074 NRAS-201ENST00000369535 4449 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PTPN4P29074 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PTPN4P29074 TFR2-201ENST00000223051 2888 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PTPN4P29074 B3GNT7-201ENST00000287590 3706 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PTPN4P29074 ARMCX4-202ENST00000423738 7424 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
PTPN4P29074 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC15.26■□□□□ 0.03
PTPN4P29074 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC15.25■□□□□ 0.03
PTPN4P29074 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
PTPN4P29074 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC15.25■□□□□ 0.03
PTPN4P29074 ZNF831-201ENST00000371030 9401 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
PTPN4P29074 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
PTPN4P29074 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC15.25■□□□□ 0.03
PTPN4P29074 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
PTPN4P29074 PDHX-201ENST00000227868 2389 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
PTPN4P29074 SMTN-202ENST00000347557 3130 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
PTPN4P29074 GABRA1-201ENST00000023897 2083 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
PTPN4P29074 TACR2-201ENST00000373306 2083 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
PTPN4P29074 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
PTPN4P29074 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC15.25■□□□□ 0.03
PTPN4P29074 HBP1-201ENST00000222574 2829 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
PTPN4P29074 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
PTPN4P29074 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
PTPN4P29074 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
PTPN4P29074 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
PTPN4P29074 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC15.25■□□□□ 0.03
PTPN4P29074 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC15.25■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 51.4 ms