Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
SDC1P18827 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC14.4□□□□□ -0.1
SDC1P18827 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC14.4□□□□□ -0.1
SDC1P18827 AC055876.2-201ENST00000531834 546 ntBASIC14.4□□□□□ -0.1
SDC1P18827 DUX4L47-201ENST00000566374 394 ntBASIC14.4□□□□□ -0.1
SDC1P18827 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC14.4□□□□□ -0.1
SDC1P18827 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC14.4□□□□□ -0.1
SDC1P18827 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC14.4□□□□□ -0.1
SDC1P18827 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC14.4□□□□□ -0.1
SDC1P18827 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC14.4□□□□□ -0.1
SDC1P18827 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC14.4□□□□□ -0.1
SDC1P18827 DPY19L2P2-201ENST00000312132 4078 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
SDC1P18827 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC14.4□□□□□ -0.1
SDC1P18827 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
SDC1P18827 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
SDC1P18827 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
SDC1P18827 PPP1R16A-201ENST00000292539 2722 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
SDC1P18827 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC14.4□□□□□ -0.1
SDC1P18827 IL21R-AS1-201ENST00000563191 2615 ntTSL 2 BASIC14.4□□□□□ -0.1
SDC1P18827 AL591623.1-201ENST00000417786 1960 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
SDC1P18827 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC14.4□□□□□ -0.1
SDC1P18827 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
SDC1P18827 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
SDC1P18827 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
SDC1P18827 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
SDC1P18827 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC14.4□□□□□ -0.1
SDC1P18827 APCDD1L-201ENST00000371149 3426 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
SDC1P18827 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC14.39□□□□□ -0.11
SDC1P18827 MICAL1-201ENST00000358577 3142 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
SDC1P18827 ASTN2-206ENST00000361477 4001 ntTSL 5 BASIC14.39□□□□□ -0.11
SDC1P18827 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC14.39□□□□□ -0.11
SDC1P18827 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
SDC1P18827 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
SDC1P18827 SP6-201ENST00000342234 3800 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
SDC1P18827 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
SDC1P18827 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
SDC1P18827 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
SDC1P18827 RNF222-202ENST00000399398 3062 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
SDC1P18827 RADIL-201ENST00000399583 3689 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
SDC1P18827 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
SDC1P18827 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
SDC1P18827 LANCL2-201ENST00000254770 4353 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
SDC1P18827 IL6R-201ENST00000344086 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
SDC1P18827 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
SDC1P18827 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC14.39□□□□□ -0.11
SDC1P18827 AC134915.1-201ENST00000426461 574 ntBASIC14.39□□□□□ -0.11
SDC1P18827 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC14.39□□□□□ -0.11
SDC1P18827 AC022447.6-201ENST00000515522 438 ntBASIC14.39□□□□□ -0.11
SDC1P18827 FADS2-205ENST00000517839 469 ntTSL 3 BASIC14.39□□□□□ -0.11
SDC1P18827 RFPL4AP1-201ENST00000530883 850 ntBASIC14.39□□□□□ -0.11
SDC1P18827 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC14.39□□□□□ -0.11
SDC1P18827 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
SDC1P18827 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC14.39□□□□□ -0.11
SDC1P18827 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
SDC1P18827 AC099568.2-201ENST00000609194 695 ntBASIC14.39□□□□□ -0.11
SDC1P18827 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC14.39□□□□□ -0.11
SDC1P18827 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC14.39□□□□□ -0.11
SDC1P18827 ORC5-208ENST00000626700 344 ntTSL 3 BASIC14.39□□□□□ -0.11
SDC1P18827 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
SDC1P18827 PLAU-202ENST00000446342 2658 ntAPPRIS ALT2 TSL 2 BASIC14.39□□□□□ -0.11
SDC1P18827 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
SDC1P18827 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
SDC1P18827 ZNF84-215ENST00000543758 3501 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
SDC1P18827 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
SDC1P18827 RSPRY1-202ENST00000537866 3586 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
SDC1P18827 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC14.39□□□□□ -0.11
SDC1P18827 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
SDC1P18827 CYB561-201ENST00000360793 3001 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
SDC1P18827 GCLM-204ENST00000615724 3008 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
SDC1P18827 MINPP1-202ENST00000371996 2415 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
SDC1P18827 MAGIX-208ENST00000616266 3295 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
SDC1P18827 CEP131-203ENST00000450824 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
SDC1P18827 TAF8-203ENST00000372982 1805 ntTSL 2 BASIC14.38□□□□□ -0.11
SDC1P18827 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SDC1P18827 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SDC1P18827 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SDC1P18827 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
SDC1P18827 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
SDC1P18827 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
SDC1P18827 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
SDC1P18827 TPO-201ENST00000329066 3138 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SDC1P18827 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SDC1P18827 SYAP1-201ENST00000380155 6129 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SDC1P18827 KIF19-202ENST00000389916 3643 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
SDC1P18827 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
SDC1P18827 SLC7A15P-201ENST00000424028 1363 ntBASIC14.38□□□□□ -0.11
SDC1P18827 MROH1-201ENST00000326134 5183 ntAPPRIS P3 TSL 5 BASIC14.38□□□□□ -0.11
SDC1P18827 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC14.38□□□□□ -0.11
SDC1P18827 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC14.38□□□□□ -0.11
SDC1P18827 KCND3-201ENST00000302127 2659 ntAPPRIS ALT1 TSL 5 BASIC14.38□□□□□ -0.11
SDC1P18827 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SDC1P18827 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
SDC1P18827 RNU1-114P-201ENST00000365297 166 ntBASIC14.38□□□□□ -0.11
SDC1P18827 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
SDC1P18827 BRF1-202ENST00000379932 884 ntTSL 5 BASIC14.38□□□□□ -0.11
SDC1P18827 C1QBPP1-201ENST00000400117 770 ntBASIC14.38□□□□□ -0.11
SDC1P18827 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC14.38□□□□□ -0.11
SDC1P18827 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC14.38□□□□□ -0.11
SDC1P18827 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC14.38□□□□□ -0.11
SDC1P18827 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 48.1 ms