Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC14.8□□□□□ -0.04
SIX3O95343 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
SIX3O95343 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC14.8□□□□□ -0.04
SIX3O95343 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
SIX3O95343 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
SIX3O95343 DMTN-203ENST00000381470 2601 ntTSL 5 BASIC14.8□□□□□ -0.04
SIX3O95343 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
SIX3O95343 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
SIX3O95343 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
SIX3O95343 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC14.8□□□□□ -0.04
SIX3O95343 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
SIX3O95343 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC14.8□□□□□ -0.04
SIX3O95343 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC14.8□□□□□ -0.04
SIX3O95343 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
SIX3O95343 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC14.8□□□□□ -0.04
SIX3O95343 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC14.8□□□□□ -0.04
SIX3O95343 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
SIX3O95343 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
SIX3O95343 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
SIX3O95343 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC14.8□□□□□ -0.04
SIX3O95343 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
SIX3O95343 FUNDC2-201ENST00000369498 6455 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
SIX3O95343 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC14.8□□□□□ -0.04
SIX3O95343 HTR3A-206ENST00000506841 2221 ntTSL 2 BASIC14.8□□□□□ -0.04
SIX3O95343 CYTH3-201ENST00000350796 4505 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
SIX3O95343 CYTH3-202ENST00000396741 4508 ntAPPRIS ALT1 TSL 5 BASIC14.8□□□□□ -0.04
SIX3O95343 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC14.8□□□□□ -0.04
SIX3O95343 ZFY-201ENST00000155093 5239 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SIX3O95343 COL9A2-202ENST00000372748 2862 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SIX3O95343 MIOS-201ENST00000340080 3453 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SIX3O95343 NYAP1-201ENST00000300179 3581 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
SIX3O95343 CDH20-201ENST00000262717 3882 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
SIX3O95343 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
SIX3O95343 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SIX3O95343 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SIX3O95343 NOC2L-201ENST00000327044 2790 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SIX3O95343 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC14.79□□□□□ -0.04
SIX3O95343 ABCG1-201ENST00000343687 3037 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
SIX3O95343 MLXIPL-203ENST00000354613 3215 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
SIX3O95343 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
SIX3O95343 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SIX3O95343 FOXD4L5-201ENST00000377420 3109 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
SIX3O95343 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
SIX3O95343 TMPRSS2-202ENST00000398585 3240 ntTSL 2 BASIC14.79□□□□□ -0.04
SIX3O95343 MED12L-203ENST00000422248 2757 ntAPPRIS ALT2 TSL 2 BASIC14.79□□□□□ -0.04
SIX3O95343 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC14.79□□□□□ -0.04
SIX3O95343 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC14.79□□□□□ -0.04
SIX3O95343 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC14.79□□□□□ -0.04
SIX3O95343 API5-203ENST00000455725 2257 ntTSL 2 BASIC14.79□□□□□ -0.04
SIX3O95343 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC14.79□□□□□ -0.04
SIX3O95343 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SIX3O95343 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
SIX3O95343 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC14.79□□□□□ -0.04
SIX3O95343 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC14.79□□□□□ -0.04
SIX3O95343 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SIX3O95343 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC14.79□□□□□ -0.04
SIX3O95343 ZNF576-203ENST00000525771 2327 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
SIX3O95343 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC14.79□□□□□ -0.04
SIX3O95343 COQ7-209ENST00000569127 2575 ntTSL 2 BASIC14.79□□□□□ -0.04
SIX3O95343 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC14.79□□□□□ -0.04
SIX3O95343 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC14.79□□□□□ -0.04
SIX3O95343 MIR8072-201ENST00000614241 80 ntBASIC14.79□□□□□ -0.04
SIX3O95343 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC14.79□□□□□ -0.04
SIX3O95343 ZSCAN32-215ENST00000618425 2788 ntTSL 2 BASIC14.79□□□□□ -0.04
SIX3O95343 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC14.79□□□□□ -0.04
SIX3O95343 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC14.79□□□□□ -0.04
SIX3O95343 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC14.79□□□□□ -0.04
SIX3O95343 AC018665.1-201ENST00000622927 1362 ntBASIC14.79□□□□□ -0.04
SIX3O95343 KCNMA1-262ENST00000639489 4302 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
SIX3O95343 PLXDC1-201ENST00000315392 6252 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SIX3O95343 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SIX3O95343 FAM120A-202ENST00000375389 3585 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
SIX3O95343 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
SIX3O95343 PIGS-203ENST00000395346 2815 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
SIX3O95343 AC097376.2-205ENST00000610159 5334 ntBASIC14.79□□□□□ -0.04
SIX3O95343 C20orf166-AS1-203ENST00000475015 2585 ntTSL 2 BASIC14.79□□□□□ -0.04
SIX3O95343 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SIX3O95343 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
SIX3O95343 CCNB1-201ENST00000256442 2169 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
SIX3O95343 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC14.78□□□□□ -0.04
SIX3O95343 RADIL-201ENST00000399583 3689 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
SIX3O95343 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
SIX3O95343 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC14.78□□□□□ -0.04
SIX3O95343 ANKLE1-201ENST00000394458 3218 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
SIX3O95343 SLC4A8-204ENST00000514353 3041 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
SIX3O95343 BTN1A1-201ENST00000244513 2895 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
SIX3O95343 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC14.78□□□□□ -0.04
SIX3O95343 OGFRL1-201ENST00000370435 8391 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
SIX3O95343 ZNF133-203ENST00000377671 2701 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
SIX3O95343 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC14.78□□□□□ -0.04
SIX3O95343 KCND3-201ENST00000302127 2659 ntAPPRIS ALT1 TSL 5 BASIC14.78□□□□□ -0.04
SIX3O95343 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC14.78□□□□□ -0.04
SIX3O95343 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
SIX3O95343 KIAA0930-203ENST00000391627 2623 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
SIX3O95343 TDRD12-202ENST00000444215 3934 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
SIX3O95343 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
SIX3O95343 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
SIX3O95343 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC14.78□□□□□ -0.04
SIX3O95343 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
SIX3O95343 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 56.3 ms