Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
DEPDC4Q8N2C3 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC21.22■□□□□ 0.99
DEPDC4Q8N2C3 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
DEPDC4Q8N2C3 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC21.22■□□□□ 0.99
DEPDC4Q8N2C3 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC21.22■□□□□ 0.99
DEPDC4Q8N2C3 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
DEPDC4Q8N2C3 AC004987.1-201ENST00000428627 508 ntBASIC21.22■□□□□ 0.99
DEPDC4Q8N2C3 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
DEPDC4Q8N2C3 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
DEPDC4Q8N2C3 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
DEPDC4Q8N2C3 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
DEPDC4Q8N2C3 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC21.22■□□□□ 0.99
DEPDC4Q8N2C3 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
DEPDC4Q8N2C3 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
DEPDC4Q8N2C3 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
DEPDC4Q8N2C3 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
DEPDC4Q8N2C3 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
DEPDC4Q8N2C3 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC21.21■□□□□ 0.99
DEPDC4Q8N2C3 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
DEPDC4Q8N2C3 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
DEPDC4Q8N2C3 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC21.21■□□□□ 0.99
DEPDC4Q8N2C3 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
DEPDC4Q8N2C3 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
DEPDC4Q8N2C3 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
DEPDC4Q8N2C3 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
DEPDC4Q8N2C3 HLA-L-211ENST00000482052 1765 ntBASIC21.2■□□□□ 0.99
DEPDC4Q8N2C3 C9orf163-202ENST00000624034 2573 ntBASIC21.2■□□□□ 0.98
DEPDC4Q8N2C3 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
DEPDC4Q8N2C3 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
DEPDC4Q8N2C3 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC21.2■□□□□ 0.98
DEPDC4Q8N2C3 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
DEPDC4Q8N2C3 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
DEPDC4Q8N2C3 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC21.2■□□□□ 0.98
DEPDC4Q8N2C3 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
DEPDC4Q8N2C3 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
DEPDC4Q8N2C3 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
DEPDC4Q8N2C3 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
DEPDC4Q8N2C3 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
DEPDC4Q8N2C3 AL117328.2-201ENST00000624617 1940 ntBASIC21.19■□□□□ 0.98
DEPDC4Q8N2C3 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
DEPDC4Q8N2C3 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC21.19■□□□□ 0.98
DEPDC4Q8N2C3 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
DEPDC4Q8N2C3 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
DEPDC4Q8N2C3 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
DEPDC4Q8N2C3 AC129492.7-201ENST00000622992 756 ntBASIC21.19■□□□□ 0.98
DEPDC4Q8N2C3 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
DEPDC4Q8N2C3 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC21.19■□□□□ 0.98
DEPDC4Q8N2C3 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC21.19■□□□□ 0.98
DEPDC4Q8N2C3 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
DEPDC4Q8N2C3 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
DEPDC4Q8N2C3 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC21.18■□□□□ 0.98
DEPDC4Q8N2C3 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
DEPDC4Q8N2C3 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
DEPDC4Q8N2C3 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC21.18■□□□□ 0.98
DEPDC4Q8N2C3 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC21.18■□□□□ 0.98
DEPDC4Q8N2C3 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
DEPDC4Q8N2C3 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
DEPDC4Q8N2C3 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
DEPDC4Q8N2C3 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC21.18■□□□□ 0.98
DEPDC4Q8N2C3 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
DEPDC4Q8N2C3 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
DEPDC4Q8N2C3 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
DEPDC4Q8N2C3 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC21.17■□□□□ 0.98
DEPDC4Q8N2C3 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC21.17■□□□□ 0.98
DEPDC4Q8N2C3 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC21.17■□□□□ 0.98
DEPDC4Q8N2C3 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
DEPDC4Q8N2C3 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
DEPDC4Q8N2C3 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC21.16■□□□□ 0.98
DEPDC4Q8N2C3 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC21.16■□□□□ 0.98
DEPDC4Q8N2C3 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
DEPDC4Q8N2C3 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
DEPDC4Q8N2C3 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
DEPDC4Q8N2C3 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC21.16■□□□□ 0.98
DEPDC4Q8N2C3 RAP2CP1-202ENST00000605179 643 ntBASIC21.16■□□□□ 0.98
DEPDC4Q8N2C3 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
DEPDC4Q8N2C3 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC21.16■□□□□ 0.98
DEPDC4Q8N2C3 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
DEPDC4Q8N2C3 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
DEPDC4Q8N2C3 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC21.15■□□□□ 0.98
DEPDC4Q8N2C3 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC21.15■□□□□ 0.98
DEPDC4Q8N2C3 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC21.15■□□□□ 0.98
DEPDC4Q8N2C3 GUK1-208ENST00000366728 842 ntTSL 2 BASIC21.15■□□□□ 0.98
DEPDC4Q8N2C3 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC21.15■□□□□ 0.98
DEPDC4Q8N2C3 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
DEPDC4Q8N2C3 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
DEPDC4Q8N2C3 AC018755.3-202ENST00000596210 929 ntBASIC21.15■□□□□ 0.98
DEPDC4Q8N2C3 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
DEPDC4Q8N2C3 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
DEPDC4Q8N2C3 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC21.15■□□□□ 0.98
DEPDC4Q8N2C3 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC21.14■□□□□ 0.98
DEPDC4Q8N2C3 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC21.14■□□□□ 0.97
DEPDC4Q8N2C3 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC21.14■□□□□ 0.97
DEPDC4Q8N2C3 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC21.14■□□□□ 0.97
DEPDC4Q8N2C3 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
DEPDC4Q8N2C3 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC21.14■□□□□ 0.97
DEPDC4Q8N2C3 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
DEPDC4Q8N2C3 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC21.14■□□□□ 0.97
DEPDC4Q8N2C3 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
DEPDC4Q8N2C3 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
DEPDC4Q8N2C3 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC21.14■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms