Protein–RNA interactions for Protein: Q6PD62

CTR9, RNA polymerase-associated protein CTR9 homolog, humanhuman

Predictions only

Length 1,173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTR9Q6PD62 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC27.42■■□□□ 1.98
CTR9Q6PD62 MIR3621-201ENST00000580529 85 ntBASIC27.42■■□□□ 1.98
CTR9Q6PD62 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC27.42■■□□□ 1.98
CTR9Q6PD62 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC27.41■■□□□ 1.98
CTR9Q6PD62 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC27.41■■□□□ 1.98
CTR9Q6PD62 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC27.41■■□□□ 1.98
CTR9Q6PD62 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC27.41■■□□□ 1.98
CTR9Q6PD62 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC27.41■■□□□ 1.98
CTR9Q6PD62 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC27.41■■□□□ 1.98
CTR9Q6PD62 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC27.41■■□□□ 1.98
CTR9Q6PD62 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC27.4■■□□□ 1.98
CTR9Q6PD62 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC27.4■■□□□ 1.98
CTR9Q6PD62 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC27.4■■□□□ 1.98
CTR9Q6PD62 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC27.4■■□□□ 1.98
CTR9Q6PD62 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC27.4■■□□□ 1.98
CTR9Q6PD62 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC27.4■■□□□ 1.98
CTR9Q6PD62 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC27.4■■□□□ 1.98
CTR9Q6PD62 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC27.39■■□□□ 1.98
CTR9Q6PD62 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC27.39■■□□□ 1.98
CTR9Q6PD62 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC27.39■■□□□ 1.98
CTR9Q6PD62 TFPT-201ENST00000391757 774 ntTSL 5 BASIC27.39■■□□□ 1.98
CTR9Q6PD62 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC27.39■■□□□ 1.98
CTR9Q6PD62 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC27.39■■□□□ 1.98
CTR9Q6PD62 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC27.39■■□□□ 1.98
CTR9Q6PD62 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC27.39■■□□□ 1.97
CTR9Q6PD62 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC27.39■■□□□ 1.97
CTR9Q6PD62 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC27.38■■□□□ 1.97
CTR9Q6PD62 AL022069.1-201ENST00000568025 1636 ntBASIC27.38■■□□□ 1.97
CTR9Q6PD62 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC27.38■■□□□ 1.97
CTR9Q6PD62 RPP21-222ENST00000433076 577 ntTSL 2 BASIC27.38■■□□□ 1.97
CTR9Q6PD62 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC27.38■■□□□ 1.97
CTR9Q6PD62 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC27.38■■□□□ 1.97
CTR9Q6PD62 SRR-208ENST00000576848 588 ntTSL 4 BASIC27.38■■□□□ 1.97
CTR9Q6PD62 TRIR-202ENST00000588213 841 ntTSL 3 BASIC27.38■■□□□ 1.97
CTR9Q6PD62 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC27.38■■□□□ 1.97
CTR9Q6PD62 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
CTR9Q6PD62 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
CTR9Q6PD62 STK32C-205ENST00000456004 607 ntTSL 2 BASIC27.37■■□□□ 1.97
CTR9Q6PD62 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
CTR9Q6PD62 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC27.36■■□□□ 1.97
CTR9Q6PD62 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC27.36■■□□□ 1.97
CTR9Q6PD62 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
CTR9Q6PD62 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
CTR9Q6PD62 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC27.36■■□□□ 1.97
CTR9Q6PD62 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC27.35■■□□□ 1.97
CTR9Q6PD62 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC27.35■■□□□ 1.97
CTR9Q6PD62 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC27.35■■□□□ 1.97
CTR9Q6PD62 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC27.35■■□□□ 1.97
CTR9Q6PD62 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC27.35■■□□□ 1.97
CTR9Q6PD62 AC131281.2-201ENST00000520478 145 ntBASIC27.35■■□□□ 1.97
CTR9Q6PD62 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC27.35■■□□□ 1.97
CTR9Q6PD62 AL356740.2-201ENST00000601559 647 ntBASIC27.35■■□□□ 1.97
CTR9Q6PD62 TMEM202-AS1-202ENST00000565181 2325 ntBASIC27.35■■□□□ 1.97
CTR9Q6PD62 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC27.35■■□□□ 1.97
CTR9Q6PD62 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC27.35■■□□□ 1.97
CTR9Q6PD62 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC27.35■■□□□ 1.97
CTR9Q6PD62 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC27.35■■□□□ 1.97
CTR9Q6PD62 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC27.34■■□□□ 1.97
CTR9Q6PD62 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC27.34■■□□□ 1.97
CTR9Q6PD62 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC27.34■■□□□ 1.97
CTR9Q6PD62 AK3-203ENST00000447596 705 ntTSL 2 BASIC27.34■■□□□ 1.97
CTR9Q6PD62 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC27.34■■□□□ 1.97
CTR9Q6PD62 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC27.34■■□□□ 1.97
CTR9Q6PD62 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC27.34■■□□□ 1.97
CTR9Q6PD62 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
CTR9Q6PD62 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC27.34■■□□□ 1.97
CTR9Q6PD62 AC008406.3-201ENST00000620001 1374 ntBASIC27.34■■□□□ 1.97
CTR9Q6PD62 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC27.33■■□□□ 1.97
CTR9Q6PD62 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC27.33■■□□□ 1.97
CTR9Q6PD62 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
CTR9Q6PD62 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
CTR9Q6PD62 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC27.33■■□□□ 1.97
CTR9Q6PD62 QDPR-206ENST00000508623 601 ntTSL 3 BASIC27.33■■□□□ 1.97
CTR9Q6PD62 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC27.33■■□□□ 1.97
CTR9Q6PD62 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC27.33■■□□□ 1.97
CTR9Q6PD62 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
CTR9Q6PD62 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC27.32■■□□□ 1.96
CTR9Q6PD62 CD37-213ENST00000598095 1598 ntTSL 2 BASIC27.32■■□□□ 1.96
CTR9Q6PD62 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC27.32■■□□□ 1.96
CTR9Q6PD62 RASSF1-AS1-201ENST00000629828 790 ntBASIC27.32■■□□□ 1.96
CTR9Q6PD62 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC27.32■■□□□ 1.96
CTR9Q6PD62 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
CTR9Q6PD62 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC27.31■■□□□ 1.96
CTR9Q6PD62 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC27.31■■□□□ 1.96
CTR9Q6PD62 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC27.31■■□□□ 1.96
CTR9Q6PD62 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC27.31■■□□□ 1.96
CTR9Q6PD62 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC27.31■■□□□ 1.96
CTR9Q6PD62 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC27.31■■□□□ 1.96
CTR9Q6PD62 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC27.31■■□□□ 1.96
CTR9Q6PD62 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC27.3■■□□□ 1.96
CTR9Q6PD62 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
CTR9Q6PD62 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
CTR9Q6PD62 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC27.3■■□□□ 1.96
CTR9Q6PD62 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC27.3■■□□□ 1.96
CTR9Q6PD62 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC27.3■■□□□ 1.96
CTR9Q6PD62 AL512631.2-201ENST00000604634 923 ntBASIC27.3■■□□□ 1.96
CTR9Q6PD62 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC27.3■■□□□ 1.96
CTR9Q6PD62 PEMT-206ENST00000435340 960 ntTSL 5 BASIC27.29■■□□□ 1.96
CTR9Q6PD62 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC27.29■■□□□ 1.96
CTR9Q6PD62 MIR4466-201ENST00000606121 54 ntBASIC27.29■■□□□ 1.96
Retrieved 100 of 98,524 protein–RNA pairs in 14.5 ms