Protein–RNA interactions for Protein: O60232

SSSCA1, Sjoegren syndrome/scleroderma autoantigen 1, humanhuman

Predictions only

Length 199 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSSCA1O60232 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SSSCA1O60232 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SSSCA1O60232 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
SSSCA1O60232 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC18.69■□□□□ 0.58
SSSCA1O60232 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC18.69■□□□□ 0.58
SSSCA1O60232 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
SSSCA1O60232 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
SSSCA1O60232 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SSSCA1O60232 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC18.69■□□□□ 0.58
SSSCA1O60232 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SSSCA1O60232 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SSSCA1O60232 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
SSSCA1O60232 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SSSCA1O60232 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC18.68■□□□□ 0.58
SSSCA1O60232 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
SSSCA1O60232 MIR3960-201ENST00000583311 91 ntBASIC18.68■□□□□ 0.58
SSSCA1O60232 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SSSCA1O60232 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SSSCA1O60232 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SSSCA1O60232 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SSSCA1O60232 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SSSCA1O60232 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SSSCA1O60232 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
SSSCA1O60232 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
SSSCA1O60232 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SSSCA1O60232 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
SSSCA1O60232 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
SSSCA1O60232 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SSSCA1O60232 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC18.66■□□□□ 0.58
SSSCA1O60232 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
SSSCA1O60232 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
SSSCA1O60232 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
SSSCA1O60232 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC18.66■□□□□ 0.58
SSSCA1O60232 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC18.66■□□□□ 0.58
SSSCA1O60232 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SSSCA1O60232 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SSSCA1O60232 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC18.66■□□□□ 0.58
SSSCA1O60232 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC18.65■□□□□ 0.58
SSSCA1O60232 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC18.65■□□□□ 0.58
SSSCA1O60232 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SSSCA1O60232 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SSSCA1O60232 ANOS2P-203ENST00000472227 1816 ntBASIC18.65■□□□□ 0.58
SSSCA1O60232 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
SSSCA1O60232 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC18.65■□□□□ 0.58
SSSCA1O60232 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC18.65■□□□□ 0.58
SSSCA1O60232 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SSSCA1O60232 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
SSSCA1O60232 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SSSCA1O60232 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SSSCA1O60232 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
SSSCA1O60232 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
SSSCA1O60232 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SSSCA1O60232 C1orf229-201ENST00000623686 2258 ntBASIC18.64■□□□□ 0.57
SSSCA1O60232 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC18.64■□□□□ 0.57
SSSCA1O60232 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC18.64■□□□□ 0.57
SSSCA1O60232 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SSSCA1O60232 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SSSCA1O60232 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SSSCA1O60232 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SSSCA1O60232 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SSSCA1O60232 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SSSCA1O60232 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
SSSCA1O60232 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC18.64■□□□□ 0.57
SSSCA1O60232 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC18.64■□□□□ 0.57
SSSCA1O60232 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
SSSCA1O60232 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
SSSCA1O60232 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SSSCA1O60232 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC18.64■□□□□ 0.57
SSSCA1O60232 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SSSCA1O60232 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC18.63■□□□□ 0.57
SSSCA1O60232 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
SSSCA1O60232 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SSSCA1O60232 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
SSSCA1O60232 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC18.63■□□□□ 0.57
SSSCA1O60232 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SSSCA1O60232 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC18.63■□□□□ 0.57
SSSCA1O60232 AL157400.5-201ENST00000507624 621 ntBASIC18.63■□□□□ 0.57
SSSCA1O60232 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SSSCA1O60232 AC025884.2-201ENST00000553429 711 ntBASIC18.63■□□□□ 0.57
SSSCA1O60232 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SSSCA1O60232 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SSSCA1O60232 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
SSSCA1O60232 FOXO3B-201ENST00000395675 1928 ntBASIC18.62■□□□□ 0.57
SSSCA1O60232 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
SSSCA1O60232 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SSSCA1O60232 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SSSCA1O60232 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SSSCA1O60232 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC18.62■□□□□ 0.57
SSSCA1O60232 AGPS-202ENST00000409888 815 ntTSL 4 BASIC18.62■□□□□ 0.57
SSSCA1O60232 RNF166-209ENST00000567844 633 ntTSL 5 BASIC18.62■□□□□ 0.57
SSSCA1O60232 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
SSSCA1O60232 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SSSCA1O60232 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SSSCA1O60232 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SSSCA1O60232 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SSSCA1O60232 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SSSCA1O60232 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
SSSCA1O60232 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC18.61■□□□□ 0.57
SSSCA1O60232 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SSSCA1O60232 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 15.7 ms