Protein–RNA interactions for Protein: O35492

Clk3, Dual specificity protein kinase CLK3, mousemouse

Predictions only

Length 638 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clk3O35492 Oaz2-201ENSMUST00000046490 1840 ntAPPRIS ALT1 TSL 5 BASIC19.56■□□□□ 0.72
Clk3O35492 B430319F04Rik-201ENSMUST00000209731 2669 ntBASIC19.56■□□□□ 0.72
Clk3O35492 Ppp1r35-201ENSMUST00000031739 956 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Clk3O35492 Lgr4-201ENSMUST00000046548 5060 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
Clk3O35492 Otud3-201ENSMUST00000097830 1668 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
Clk3O35492 Gm2415-201ENSMUST00000128982 1474 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Clk3O35492 Abhd11-201ENSMUST00000046999 1493 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Clk3O35492 Olfm1-204ENSMUST00000113920 2513 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Clk3O35492 Wipi1-203ENSMUST00000106689 1220 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Clk3O35492 Cbx4-201ENSMUST00000026665 5179 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Clk3O35492 Nrxn2-208ENSMUST00000137166 6314 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
Clk3O35492 Phc2-202ENSMUST00000106079 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
Clk3O35492 Cers5-201ENSMUST00000023762 2096 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
Clk3O35492 Nt5m-201ENSMUST00000102695 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Clk3O35492 Ccdc88a-202ENSMUST00000109477 1716 ntTSL 2 BASIC19.54■□□□□ 0.72
Clk3O35492 Atp8a1-203ENSMUST00000113651 808 ntTSL 5 BASIC19.54■□□□□ 0.72
Clk3O35492 Gm12905-201ENSMUST00000153814 658 ntTSL 2 BASIC19.54■□□□□ 0.72
Clk3O35492 Zfp346-203ENSMUST00000159278 1253 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
Clk3O35492 Fam149b-201ENSMUST00000037698 924 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Clk3O35492 Spint1-201ENSMUST00000028783 2273 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Clk3O35492 Kremen2-201ENSMUST00000046525 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Clk3O35492 Ppp3cc-201ENSMUST00000078434 1970 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
Clk3O35492 Lyar-201ENSMUST00000087514 1563 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Clk3O35492 Gm20684-201ENSMUST00000176744 380 ntTSL 3 BASIC19.53■□□□□ 0.72
Clk3O35492 Trim47-201ENSMUST00000021120 2204 ntAPPRIS P4 TSL 1 (best) BASIC19.53■□□□□ 0.72
Clk3O35492 Abhd12-201ENSMUST00000056149 1999 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Clk3O35492 Chst12-201ENSMUST00000043050 2331 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Clk3O35492 Nphp1-202ENSMUST00000110357 2296 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
Clk3O35492 2310022B05Rik-201ENSMUST00000034464 3307 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Clk3O35492 E530011L22Rik-202ENSMUST00000216791 2007 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Clk3O35492 Dok6-201ENSMUST00000097495 1441 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Clk3O35492 Erc1-202ENSMUST00000079582 2304 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Clk3O35492 St3gal5-202ENSMUST00000114112 2439 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
Clk3O35492 Gng12-203ENSMUST00000114224 680 ntAPPRIS P1 TSL 3 BASIC19.52■□□□□ 0.72
Clk3O35492 Gng12-206ENSMUST00000114227 1125 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Clk3O35492 Gm2415-202ENSMUST00000134688 401 ntTSL 2 BASIC19.52■□□□□ 0.72
Clk3O35492 Trappc6b-207ENSMUST00000218686 785 ntTSL 3 BASIC19.52■□□□□ 0.72
Clk3O35492 Coprs-201ENSMUST00000033839 793 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Clk3O35492 Ugp2-201ENSMUST00000060895 2044 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Clk3O35492 Krt1-201ENSMUST00000023790 2445 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
Clk3O35492 Inpp5a-203ENSMUST00000106098 2826 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
Clk3O35492 Bmp2k-202ENSMUST00000112974 3244 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Clk3O35492 4933431K14Rik-201ENSMUST00000195799 1352 ntBASIC19.51■□□□□ 0.71
Clk3O35492 Ccnd3-201ENSMUST00000037333 1999 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Clk3O35492 Gm9934-201ENSMUST00000098303 2077 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Clk3O35492 Cav2-201ENSMUST00000000058 2733 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Clk3O35492 Pkmyt1-201ENSMUST00000024701 2039 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Clk3O35492 Map4k3-202ENSMUST00000112389 4231 ntAPPRIS ALT1 TSL 5 BASIC19.5■□□□□ 0.71
Clk3O35492 Dmrta2-201ENSMUST00000061187 2922 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Clk3O35492 Bola3-207ENSMUST00000136501 2312 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Clk3O35492 Gm43566-201ENSMUST00000196851 808 ntBASIC19.5■□□□□ 0.71
Clk3O35492 Slbp-201ENSMUST00000057551 1906 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
Clk3O35492 C1qtnf5-203ENSMUST00000114818 1337 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
Clk3O35492 Gm43403-201ENSMUST00000198011 1786 ntBASIC19.49■□□□□ 0.71
Clk3O35492 Stmn4-204ENSMUST00000121955 1361 ntTSL 5 BASIC19.49■□□□□ 0.71
Clk3O35492 Tmem192-203ENSMUST00000209852 1193 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Clk3O35492 Nsd1-206ENSMUST00000224918 1001 ntBASIC19.49■□□□□ 0.71
Clk3O35492 Pi4kb-207ENSMUST00000167008 1962 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Clk3O35492 Rasa1-201ENSMUST00000109552 4563 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Clk3O35492 Dennd6a-202ENSMUST00000203874 2677 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Clk3O35492 Cacna2d2-201ENSMUST00000010210 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
Clk3O35492 Slc27a3-201ENSMUST00000029541 2259 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Clk3O35492 Gm5602-201ENSMUST00000146366 1763 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Clk3O35492 Slc35a2-201ENSMUST00000096514 1757 ntTSL 5 BASIC19.48■□□□□ 0.71
Clk3O35492 Gm27253-201ENSMUST00000183670 367 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Clk3O35492 Bbc3-201ENSMUST00000002152 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Clk3O35492 Emc6-201ENSMUST00000054952 1332 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Clk3O35492 Pdss1-207ENSMUST00000152170 1538 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Clk3O35492 Mettl24-201ENSMUST00000058747 1529 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Clk3O35492 Rin3-207ENSMUST00000150795 937 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Clk3O35492 Jtb-201ENSMUST00000029546 1101 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Clk3O35492 Iqck-206ENSMUST00000208658 2891 ntBASIC19.47■□□□□ 0.71
Clk3O35492 Zfp579-201ENSMUST00000108572 2157 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
Clk3O35492 Pde7a-202ENSMUST00000099195 6298 ntAPPRIS ALT1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Clk3O35492 Gm28536-201ENSMUST00000190971 1317 ntBASIC19.47■□□□□ 0.71
Clk3O35492 Gm26660-201ENSMUST00000181582 2543 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Clk3O35492 Hras-201ENSMUST00000026572 2828 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Clk3O35492 Xkr6-201ENSMUST00000119973 2963 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Clk3O35492 Ipmk-201ENSMUST00000079252 5447 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
Clk3O35492 Nkx2-5-201ENSMUST00000015723 1525 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Clk3O35492 Gsr-201ENSMUST00000033992 2673 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Clk3O35492 Tmem147-203ENSMUST00000207296 875 ntTSL 3 BASIC19.46■□□□□ 0.71
Clk3O35492 Mpv17l2-201ENSMUST00000038626 980 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Clk3O35492 Nup153-201ENSMUST00000021803 6109 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Clk3O35492 Rgs6-202ENSMUST00000161801 2141 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Clk3O35492 Fance-204ENSMUST00000114804 1842 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Clk3O35492 N4bp1-201ENSMUST00000034074 6469 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Clk3O35492 Galnt11-201ENSMUST00000045737 2552 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Clk3O35492 Eif2b3-203ENSMUST00000106448 1555 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
Clk3O35492 Rell2-210ENSMUST00000176104 2150 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
Clk3O35492 Hoxd11-202ENSMUST00000142312 1111 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Clk3O35492 Slc22a23-201ENSMUST00000040336 6251 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Clk3O35492 Ube2d2a-202ENSMUST00000170693 2483 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Clk3O35492 Rora-202ENSMUST00000113624 2591 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Clk3O35492 Shox2-201ENSMUST00000029422 3079 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Clk3O35492 Cyb561-201ENSMUST00000019734 2741 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Clk3O35492 Gm11847-201ENSMUST00000125165 1119 ntBASIC19.44■□□□□ 0.7
Clk3O35492 Ccdc84-212ENSMUST00000217351 888 ntTSL 3 BASIC19.44■□□□□ 0.7
Clk3O35492 Hnrnpa3-201ENSMUST00000090792 1140 ntAPPRIS P3 TSL 5 BASIC19.44■□□□□ 0.7
Clk3O35492 Amn-201ENSMUST00000021707 1701 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Retrieved 100 of 76,532 protein–RNA pairs in 16.9 ms