Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
SLC28A1O00337 AC068473.5-201ENST00000616428 2072 ntBASIC22.12■■□□□ 1.13
SLC28A1O00337 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC22.12■■□□□ 1.13
SLC28A1O00337 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC22.12■■□□□ 1.13
SLC28A1O00337 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC22.12■■□□□ 1.13
SLC28A1O00337 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
SLC28A1O00337 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
SLC28A1O00337 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC22.12■■□□□ 1.13
SLC28A1O00337 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
SLC28A1O00337 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC22.11■■□□□ 1.13
SLC28A1O00337 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
SLC28A1O00337 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
SLC28A1O00337 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC22.11■■□□□ 1.13
SLC28A1O00337 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC22.11■■□□□ 1.13
SLC28A1O00337 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
SLC28A1O00337 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC22.11■■□□□ 1.13
SLC28A1O00337 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC22.11■■□□□ 1.13
SLC28A1O00337 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC22.11■■□□□ 1.13
SLC28A1O00337 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC22.11■■□□□ 1.13
SLC28A1O00337 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
SLC28A1O00337 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC22.1■■□□□ 1.13
SLC28A1O00337 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
SLC28A1O00337 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC22.1■■□□□ 1.13
SLC28A1O00337 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC22.1■■□□□ 1.13
SLC28A1O00337 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
SLC28A1O00337 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
SLC28A1O00337 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC22.1■■□□□ 1.13
SLC28A1O00337 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC22.1■■□□□ 1.13
SLC28A1O00337 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
SLC28A1O00337 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC22.1■■□□□ 1.13
SLC28A1O00337 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC22.1■■□□□ 1.13
SLC28A1O00337 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC22.1■■□□□ 1.13
SLC28A1O00337 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC22.1■■□□□ 1.13
SLC28A1O00337 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC22.09■■□□□ 1.13
SLC28A1O00337 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
SLC28A1O00337 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
SLC28A1O00337 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
SLC28A1O00337 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC22.09■■□□□ 1.13
SLC28A1O00337 AC011551.1-201ENST00000614101 683 ntBASIC22.09■■□□□ 1.13
SLC28A1O00337 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC22.09■■□□□ 1.13
SLC28A1O00337 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
SLC28A1O00337 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC22.09■■□□□ 1.13
SLC28A1O00337 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
SLC28A1O00337 NFE2L3P1-201ENST00000588207 1959 ntBASIC22.08■■□□□ 1.13
SLC28A1O00337 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
SLC28A1O00337 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC22.08■■□□□ 1.13
SLC28A1O00337 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC22.08■■□□□ 1.13
SLC28A1O00337 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC22.08■■□□□ 1.13
SLC28A1O00337 AC133561.1-201ENST00000568600 2415 ntBASIC22.08■■□□□ 1.13
SLC28A1O00337 AL022069.1-201ENST00000568025 1636 ntBASIC22.08■■□□□ 1.13
SLC28A1O00337 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
SLC28A1O00337 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC22.08■■□□□ 1.12
SLC28A1O00337 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC22.07■■□□□ 1.12
SLC28A1O00337 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC22.07■■□□□ 1.12
SLC28A1O00337 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC22.07■■□□□ 1.12
SLC28A1O00337 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC22.07■■□□□ 1.12
SLC28A1O00337 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
SLC28A1O00337 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC22.07■■□□□ 1.12
SLC28A1O00337 AC019171.1-201ENST00000601251 1056 ntBASIC22.07■■□□□ 1.12
SLC28A1O00337 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC22.06■■□□□ 1.12
SLC28A1O00337 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC22.06■■□□□ 1.12
SLC28A1O00337 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
SLC28A1O00337 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC22.06■■□□□ 1.12
SLC28A1O00337 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC22.06■■□□□ 1.12
SLC28A1O00337 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
SLC28A1O00337 AC022616.5-201ENST00000518796 181 ntBASIC22.06■■□□□ 1.12
SLC28A1O00337 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
SLC28A1O00337 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC22.06■■□□□ 1.12
SLC28A1O00337 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC22.06■■□□□ 1.12
SLC28A1O00337 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
SLC28A1O00337 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
SLC28A1O00337 EI24-213ENST00000618552 1747 ntTSL 5 BASIC22.06■■□□□ 1.12
SLC28A1O00337 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
SLC28A1O00337 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC22.05■■□□□ 1.12
SLC28A1O00337 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC22.05■■□□□ 1.12
SLC28A1O00337 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
SLC28A1O00337 MTX2-204ENST00000443241 799 ntTSL 3 BASIC22.05■■□□□ 1.12
SLC28A1O00337 AC139795.1-202ENST00000500444 432 ntBASIC22.05■■□□□ 1.12
SLC28A1O00337 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC22.05■■□□□ 1.12
SLC28A1O00337 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
SLC28A1O00337 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
SLC28A1O00337 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
SLC28A1O00337 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC22.04■■□□□ 1.12
SLC28A1O00337 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC22.04■■□□□ 1.12
SLC28A1O00337 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
SLC28A1O00337 ABHD17AP5-201ENST00000580133 923 ntBASIC22.04■■□□□ 1.12
SLC28A1O00337 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC22.04■■□□□ 1.12
SLC28A1O00337 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC22.04■■□□□ 1.12
SLC28A1O00337 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC22.04■■□□□ 1.12
SLC28A1O00337 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
SLC28A1O00337 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
SLC28A1O00337 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC22.03■■□□□ 1.12
SLC28A1O00337 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
SLC28A1O00337 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC22.03■■□□□ 1.12
SLC28A1O00337 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
SLC28A1O00337 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC22.03■■□□□ 1.12
SLC28A1O00337 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC22.03■■□□□ 1.12
SLC28A1O00337 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC22.03■■□□□ 1.12
SLC28A1O00337 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
SLC28A1O00337 BRD4-212ENST00000630599 726 ntTSL 2 BASIC22.03■■□□□ 1.12
Retrieved 100 of 98,524 protein–RNA pairs in 15.7 ms