Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL28A1Q2UY09 C8orf49-201ENST00000525043 1968 ntBASIC14.6□□□□□ -0.07
COL28A1Q2UY09 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
COL28A1Q2UY09 CICP13-201ENST00000422015 2789 ntBASIC14.6□□□□□ -0.07
COL28A1Q2UY09 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL28A1Q2UY09 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC14.6□□□□□ -0.07
COL28A1Q2UY09 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL28A1Q2UY09 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
COL28A1Q2UY09 IPO8-201ENST00000256079 5325 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL28A1Q2UY09 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL28A1Q2UY09 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC14.6□□□□□ -0.07
COL28A1Q2UY09 FAM177A1-202ENST00000382406 858 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL28A1Q2UY09 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC14.6□□□□□ -0.07
COL28A1Q2UY09 IGHV3-49-201ENST00000390625 439 ntAPPRIS P1 BASIC14.6□□□□□ -0.07
COL28A1Q2UY09 MIR1227-201ENST00000408484 88 ntBASIC14.6□□□□□ -0.07
COL28A1Q2UY09 GSTK1-202ENST00000409500 888 ntTSL 2 BASIC14.6□□□□□ -0.07
COL28A1Q2UY09 TOMM22P5-201ENST00000416399 439 ntBASIC14.6□□□□□ -0.07
COL28A1Q2UY09 AL121901.1-201ENST00000419613 366 ntTSL 3 BASIC14.6□□□□□ -0.07
COL28A1Q2UY09 TARDBPP1-201ENST00000442013 1203 ntBASIC14.6□□□□□ -0.07
COL28A1Q2UY09 PPOX-204ENST00000462866 473 ntTSL 5 BASIC14.6□□□□□ -0.07
COL28A1Q2UY09 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
COL28A1Q2UY09 AC246817.2-203ENST00000517357 569 ntTSL 4 BASIC14.6□□□□□ -0.07
COL28A1Q2UY09 AC246817.2-202ENST00000519393 564 ntTSL 4 BASIC14.6□□□□□ -0.07
COL28A1Q2UY09 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC14.6□□□□□ -0.07
COL28A1Q2UY09 CSTF3-206ENST00000524827 693 ntTSL 3 BASIC14.6□□□□□ -0.07
COL28A1Q2UY09 AP001582.1-201ENST00000525856 295 ntBASIC14.6□□□□□ -0.07
COL28A1Q2UY09 CFL1-206ENST00000527344 962 ntTSL 2 BASIC14.6□□□□□ -0.07
COL28A1Q2UY09 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC14.6□□□□□ -0.07
COL28A1Q2UY09 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL28A1Q2UY09 LINC01475-201ENST00000548010 766 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
COL28A1Q2UY09 TCL1A-208ENST00000556450 872 ntAPPRIS P1 TSL 3 BASIC14.6□□□□□ -0.07
COL28A1Q2UY09 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL28A1Q2UY09 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC14.6□□□□□ -0.07
COL28A1Q2UY09 TXNDC17-202ENST00000570330 459 ntTSL 2 BASIC14.6□□□□□ -0.07
COL28A1Q2UY09 ZSCAN10-205ENST00000572548 618 ntTSL 3 BASIC14.6□□□□□ -0.07
COL28A1Q2UY09 AC145423.3-201ENST00000615987 467 ntBASIC14.6□□□□□ -0.07
COL28A1Q2UY09 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC14.6□□□□□ -0.07
COL28A1Q2UY09 AC006453.4-201ENST00000636949 1252 ntBASIC14.6□□□□□ -0.07
COL28A1Q2UY09 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL28A1Q2UY09 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL28A1Q2UY09 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL28A1Q2UY09 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
COL28A1Q2UY09 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL28A1Q2UY09 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
COL28A1Q2UY09 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC14.6□□□□□ -0.07
COL28A1Q2UY09 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL28A1Q2UY09 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL28A1Q2UY09 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC14.6□□□□□ -0.07
COL28A1Q2UY09 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC14.6□□□□□ -0.07
COL28A1Q2UY09 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL28A1Q2UY09 MAGEA4-205ENST00000393920 1721 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
COL28A1Q2UY09 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
COL28A1Q2UY09 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC14.6□□□□□ -0.07
COL28A1Q2UY09 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
COL28A1Q2UY09 DNM1P51-202ENST00000558801 8752 ntTSL 5 BASIC14.6□□□□□ -0.07
COL28A1Q2UY09 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL28A1Q2UY09 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC14.6□□□□□ -0.07
COL28A1Q2UY09 REXO1L1P-202ENST00000608646 1974 ntBASIC14.6□□□□□ -0.07
COL28A1Q2UY09 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL28A1Q2UY09 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC14.6□□□□□ -0.07
COL28A1Q2UY09 WSCD1-201ENST00000317744 5819 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL28A1Q2UY09 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC14.59□□□□□ -0.07
COL28A1Q2UY09 SLC9A7P1-201ENST00000554295 3311 ntBASIC14.59□□□□□ -0.07
COL28A1Q2UY09 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
COL28A1Q2UY09 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
COL28A1Q2UY09 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC14.59□□□□□ -0.07
COL28A1Q2UY09 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
COL28A1Q2UY09 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
COL28A1Q2UY09 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
COL28A1Q2UY09 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
COL28A1Q2UY09 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
COL28A1Q2UY09 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC14.59□□□□□ -0.07
COL28A1Q2UY09 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
COL28A1Q2UY09 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC14.59□□□□□ -0.07
COL28A1Q2UY09 FOSL2-201ENST00000264716 6708 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
COL28A1Q2UY09 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
COL28A1Q2UY09 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC14.59□□□□□ -0.07
COL28A1Q2UY09 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
COL28A1Q2UY09 MPV17-205ENST00000402310 906 ntTSL 5 BASIC14.59□□□□□ -0.07
COL28A1Q2UY09 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC14.59□□□□□ -0.07
COL28A1Q2UY09 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC14.59□□□□□ -0.07
COL28A1Q2UY09 AC079807.2-203ENST00000417692 656 ntTSL 2 BASIC14.59□□□□□ -0.07
COL28A1Q2UY09 AL008707.1-201ENST00000422498 534 ntBASIC14.59□□□□□ -0.07
COL28A1Q2UY09 HNRNPA1P63-201ENST00000427917 963 ntBASIC14.59□□□□□ -0.07
COL28A1Q2UY09 AL096772.1-201ENST00000451135 781 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
COL28A1Q2UY09 SRSF10-211ENST00000484146 1089 ntTSL 2 BASIC14.59□□□□□ -0.07
COL28A1Q2UY09 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC14.59□□□□□ -0.07
COL28A1Q2UY09 AC125604.1-201ENST00000496255 707 ntBASIC14.59□□□□□ -0.07
COL28A1Q2UY09 AC018680.1-202ENST00000500324 525 ntTSL 3 BASIC14.59□□□□□ -0.07
COL28A1Q2UY09 AC097103.2-206ENST00000514729 588 ntTSL 4 BASIC14.59□□□□□ -0.07
COL28A1Q2UY09 RNA5SP486-201ENST00000515961 83 ntBASIC14.59□□□□□ -0.07
COL28A1Q2UY09 GATD1-205ENST00000524550 995 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
COL28A1Q2UY09 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC14.59□□□□□ -0.07
COL28A1Q2UY09 AC135983.4-201ENST00000564116 1262 ntBASIC14.59□□□□□ -0.07
COL28A1Q2UY09 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC14.59□□□□□ -0.07
COL28A1Q2UY09 C20orf141-202ENST00000603872 580 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
COL28A1Q2UY09 AC073352.2-201ENST00000609385 439 ntBASIC14.59□□□□□ -0.07
COL28A1Q2UY09 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC14.59□□□□□ -0.07
COL28A1Q2UY09 COX6A1P2-201ENST00000620597 330 ntBASIC14.59□□□□□ -0.07
COL28A1Q2UY09 AC132938.4-201ENST00000623835 848 ntBASIC14.59□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 39.2 ms