Protein–RNA interactions for Protein: O95628

CNOT4, CCR4-NOT transcription complex subunit 4, humanhuman

Known RBP Predictions only

Length 575 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT4O95628 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.24
CNOT4O95628 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.24
CNOT4O95628 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC13.52□□□□□ -0.24
CNOT4O95628 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC13.52□□□□□ -0.24
CNOT4O95628 ATP2B3-201ENST00000263519 6420 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
CNOT4O95628 NRG2-209ENST00000541337 3723 ntTSL 5 BASIC13.52□□□□□ -0.24
CNOT4O95628 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
CNOT4O95628 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC13.52□□□□□ -0.24
CNOT4O95628 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC13.52□□□□□ -0.24
CNOT4O95628 TCAF2P1-201ENST00000291129 2421 ntBASIC13.52□□□□□ -0.24
CNOT4O95628 SLC35C2-213ENST00000543605 5740 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
CNOT4O95628 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC13.52□□□□□ -0.24
CNOT4O95628 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC13.52□□□□□ -0.24
CNOT4O95628 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.24
CNOT4O95628 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.24
CNOT4O95628 ATP5F1-202ENST00000369722 3156 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
CNOT4O95628 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CNOT4O95628 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC13.52□□□□□ -0.25
CNOT4O95628 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CNOT4O95628 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CNOT4O95628 LBX2-201ENST00000341396 886 ntTSL 3 BASIC13.52□□□□□ -0.25
CNOT4O95628 AL139094.1-201ENST00000405549 1188 ntBASIC13.52□□□□□ -0.25
CNOT4O95628 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC13.52□□□□□ -0.25
CNOT4O95628 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC13.52□□□□□ -0.25
CNOT4O95628 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
CNOT4O95628 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC13.52□□□□□ -0.25
CNOT4O95628 MIR4538-201ENST00000581377 78 ntBASIC13.52□□□□□ -0.25
CNOT4O95628 RN7SL219P-201ENST00000582872 296 ntBASIC13.52□□□□□ -0.25
CNOT4O95628 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC13.52□□□□□ -0.25
CNOT4O95628 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC13.52□□□□□ -0.25
CNOT4O95628 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC13.52□□□□□ -0.25
CNOT4O95628 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC13.52□□□□□ -0.25
CNOT4O95628 AC018665.1-201ENST00000622927 1362 ntBASIC13.52□□□□□ -0.25
CNOT4O95628 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC13.52□□□□□ -0.25
CNOT4O95628 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
CNOT4O95628 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CNOT4O95628 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.25
CNOT4O95628 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CNOT4O95628 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC13.52□□□□□ -0.25
CNOT4O95628 TP73-213ENST00000604479 1623 ntTSL 5 BASIC13.52□□□□□ -0.25
CNOT4O95628 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
CNOT4O95628 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC13.52□□□□□ -0.25
CNOT4O95628 USE1-206ENST00000595101 1776 ntTSL 2 BASIC13.52□□□□□ -0.25
CNOT4O95628 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
CNOT4O95628 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CNOT4O95628 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC13.52□□□□□ -0.25
CNOT4O95628 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC13.52□□□□□ -0.25
CNOT4O95628 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CNOT4O95628 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC13.52□□□□□ -0.25
CNOT4O95628 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
CNOT4O95628 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CNOT4O95628 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC13.52□□□□□ -0.25
CNOT4O95628 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
CNOT4O95628 SRD5A3-201ENST00000264228 4190 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CNOT4O95628 EIF4G1-201ENST00000342981 5667 ntAPPRIS ALT1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CNOT4O95628 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CNOT4O95628 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC13.51□□□□□ -0.25
CNOT4O95628 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC13.51□□□□□ -0.25
CNOT4O95628 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
CNOT4O95628 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
CNOT4O95628 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CNOT4O95628 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC13.51□□□□□ -0.25
CNOT4O95628 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CNOT4O95628 C1R-202ENST00000536053 2347 ntTSL 2 BASIC13.51□□□□□ -0.25
CNOT4O95628 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC13.51□□□□□ -0.25
CNOT4O95628 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
CNOT4O95628 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
CNOT4O95628 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
CNOT4O95628 PCNX4-203ENST00000406854 4666 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
CNOT4O95628 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CNOT4O95628 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC13.51□□□□□ -0.25
CNOT4O95628 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC13.51□□□□□ -0.25
CNOT4O95628 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CNOT4O95628 SOCS5-202ENST00000394861 4058 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CNOT4O95628 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CNOT4O95628 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC13.51□□□□□ -0.25
CNOT4O95628 PRM2-201ENST00000241808 680 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
CNOT4O95628 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC13.51□□□□□ -0.25
CNOT4O95628 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
CNOT4O95628 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC13.51□□□□□ -0.25
CNOT4O95628 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC13.51□□□□□ -0.25
CNOT4O95628 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
CNOT4O95628 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC13.51□□□□□ -0.25
CNOT4O95628 PRM2-202ENST00000435245 723 ntAPPRIS ALT2 TSL 2 BASIC13.51□□□□□ -0.25
CNOT4O95628 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC13.51□□□□□ -0.25
CNOT4O95628 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC13.51□□□□□ -0.25
CNOT4O95628 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC13.51□□□□□ -0.25
CNOT4O95628 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC13.51□□□□□ -0.25
CNOT4O95628 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
CNOT4O95628 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
CNOT4O95628 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CNOT4O95628 RP1L1-202ENST00000382483 7973 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CNOT4O95628 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC13.51□□□□□ -0.25
CNOT4O95628 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CNOT4O95628 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC13.51□□□□□ -0.25
CNOT4O95628 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC13.51□□□□□ -0.25
CNOT4O95628 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
CNOT4O95628 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC13.51□□□□□ -0.25
CNOT4O95628 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
CNOT4O95628 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 47.3 ms