Protein–RNA interactions for Protein: O95096

NKX2-2, Homeobox protein Nkx-2.2, humanhuman

Predictions only

Length 273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-2O95096 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC13.93□□□□□ -0.18
NKX2-2O95096 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
NKX2-2O95096 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
NKX2-2O95096 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
NKX2-2O95096 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
NKX2-2O95096 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
NKX2-2O95096 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
NKX2-2O95096 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC13.93□□□□□ -0.18
NKX2-2O95096 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC13.93□□□□□ -0.18
NKX2-2O95096 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC13.93□□□□□ -0.18
NKX2-2O95096 PTPA-220ENST00000436883 532 ntTSL 4 BASIC13.93□□□□□ -0.18
NKX2-2O95096 AC245100.3-201ENST00000441281 285 ntBASIC13.93□□□□□ -0.18
NKX2-2O95096 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC13.93□□□□□ -0.18
NKX2-2O95096 FO681548.1-201ENST00000455617 1132 ntBASIC13.93□□□□□ -0.18
NKX2-2O95096 AP001889.1-201ENST00000525414 633 ntBASIC13.93□□□□□ -0.18
NKX2-2O95096 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC13.93□□□□□ -0.18
NKX2-2O95096 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC13.93□□□□□ -0.18
NKX2-2O95096 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
NKX2-2O95096 RN7SL48P-201ENST00000579283 293 ntBASIC13.93□□□□□ -0.18
NKX2-2O95096 PIGL-212ENST00000581006 554 ntTSL 4 BASIC13.93□□□□□ -0.18
NKX2-2O95096 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC13.93□□□□□ -0.18
NKX2-2O95096 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC13.93□□□□□ -0.18
NKX2-2O95096 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC13.93□□□□□ -0.18
NKX2-2O95096 SRP9-204ENST00000619790 377 ntTSL 2 BASIC13.93□□□□□ -0.18
NKX2-2O95096 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC13.93□□□□□ -0.18
NKX2-2O95096 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
NKX2-2O95096 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
NKX2-2O95096 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC13.93□□□□□ -0.18
NKX2-2O95096 AC113367.3-201ENST00000508316 1912 ntBASIC13.93□□□□□ -0.18
NKX2-2O95096 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
NKX2-2O95096 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
NKX2-2O95096 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
NKX2-2O95096 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
NKX2-2O95096 AC003102.2-201ENST00000589195 1469 ntBASIC13.93□□□□□ -0.18
NKX2-2O95096 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
NKX2-2O95096 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC13.92□□□□□ -0.18
NKX2-2O95096 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
NKX2-2O95096 CU639417.3-201ENST00000624240 1404 ntBASIC13.92□□□□□ -0.18
NKX2-2O95096 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
NKX2-2O95096 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
NKX2-2O95096 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC13.92□□□□□ -0.18
NKX2-2O95096 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC13.92□□□□□ -0.18
NKX2-2O95096 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC13.92□□□□□ -0.18
NKX2-2O95096 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC13.92□□□□□ -0.18
NKX2-2O95096 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
NKX2-2O95096 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC13.92□□□□□ -0.18
NKX2-2O95096 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC13.92□□□□□ -0.18
NKX2-2O95096 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
NKX2-2O95096 AC007969.1-201ENST00000433675 447 ntBASIC13.92□□□□□ -0.18
NKX2-2O95096 PNKD-204ENST00000436005 978 ntTSL 5 BASIC13.92□□□□□ -0.18
NKX2-2O95096 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC13.92□□□□□ -0.18
NKX2-2O95096 AL355864.2-201ENST00000447420 863 ntBASIC13.92□□□□□ -0.18
NKX2-2O95096 INE1-201ENST00000456273 945 ntBASIC13.92□□□□□ -0.18
NKX2-2O95096 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC13.92□□□□□ -0.18
NKX2-2O95096 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC13.92□□□□□ -0.18
NKX2-2O95096 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC13.92□□□□□ -0.18
NKX2-2O95096 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC13.92□□□□□ -0.18
NKX2-2O95096 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
NKX2-2O95096 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC13.92□□□□□ -0.18
NKX2-2O95096 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC13.92□□□□□ -0.18
NKX2-2O95096 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC13.92□□□□□ -0.18
NKX2-2O95096 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
NKX2-2O95096 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC13.92□□□□□ -0.18
NKX2-2O95096 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
NKX2-2O95096 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC13.92□□□□□ -0.18
NKX2-2O95096 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
NKX2-2O95096 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
NKX2-2O95096 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC13.92□□□□□ -0.18
NKX2-2O95096 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
NKX2-2O95096 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
NKX2-2O95096 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
NKX2-2O95096 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
NKX2-2O95096 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
NKX2-2O95096 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
NKX2-2O95096 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
NKX2-2O95096 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
NKX2-2O95096 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
NKX2-2O95096 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
NKX2-2O95096 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC13.92□□□□□ -0.18
NKX2-2O95096 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
NKX2-2O95096 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC13.91□□□□□ -0.18
NKX2-2O95096 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC13.91□□□□□ -0.18
NKX2-2O95096 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC13.91□□□□□ -0.18
NKX2-2O95096 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC13.91□□□□□ -0.18
NKX2-2O95096 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
NKX2-2O95096 FOS-202ENST00000535987 1402 ntTSL 2 BASIC13.91□□□□□ -0.18
NKX2-2O95096 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
NKX2-2O95096 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC13.91□□□□□ -0.18
NKX2-2O95096 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
NKX2-2O95096 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC13.91□□□□□ -0.18
NKX2-2O95096 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
NKX2-2O95096 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
NKX2-2O95096 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC13.91□□□□□ -0.18
NKX2-2O95096 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC13.91□□□□□ -0.18
NKX2-2O95096 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
NKX2-2O95096 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
NKX2-2O95096 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
NKX2-2O95096 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC13.91□□□□□ -0.18
NKX2-2O95096 AC005229.1-201ENST00000392885 409 ntBASIC13.91□□□□□ -0.18
NKX2-2O95096 POM121L8P-201ENST00000417732 1281 ntBASIC13.91□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 102.9 ms