Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
CCDC140Q96MF4 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC11.72□□□□□ -0.53
CCDC140Q96MF4 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
CCDC140Q96MF4 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
CCDC140Q96MF4 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC11.72□□□□□ -0.53
CCDC140Q96MF4 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC11.72□□□□□ -0.53
CCDC140Q96MF4 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC11.72□□□□□ -0.53
CCDC140Q96MF4 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC11.72□□□□□ -0.53
CCDC140Q96MF4 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC11.72□□□□□ -0.53
CCDC140Q96MF4 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC11.72□□□□□ -0.53
CCDC140Q96MF4 AC012441.1-201ENST00000446669 685 ntBASIC11.72□□□□□ -0.53
CCDC140Q96MF4 RN7SL837P-201ENST00000463010 287 ntBASIC11.72□□□□□ -0.53
CCDC140Q96MF4 RN7SL752P-201ENST00000463779 287 ntBASIC11.72□□□□□ -0.53
CCDC140Q96MF4 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC11.72□□□□□ -0.53
CCDC140Q96MF4 NEU3-203ENST00000529024 581 ntTSL 3 BASIC11.72□□□□□ -0.53
CCDC140Q96MF4 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
CCDC140Q96MF4 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC11.72□□□□□ -0.53
CCDC140Q96MF4 POLE2-203ENST00000553805 496 ntTSL 2 BASIC11.72□□□□□ -0.53
CCDC140Q96MF4 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC11.72□□□□□ -0.53
CCDC140Q96MF4 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC11.72□□□□□ -0.53
CCDC140Q96MF4 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC11.72□□□□□ -0.53
CCDC140Q96MF4 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC11.72□□□□□ -0.53
CCDC140Q96MF4 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC11.72□□□□□ -0.53
CCDC140Q96MF4 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC11.72□□□□□ -0.53
CCDC140Q96MF4 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC11.72□□□□□ -0.53
CCDC140Q96MF4 AL603764.1-201ENST00000636452 321 ntBASIC11.72□□□□□ -0.53
CCDC140Q96MF4 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
CCDC140Q96MF4 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
CCDC140Q96MF4 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC11.72□□□□□ -0.53
CCDC140Q96MF4 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
CCDC140Q96MF4 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC11.72□□□□□ -0.53
CCDC140Q96MF4 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
CCDC140Q96MF4 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
CCDC140Q96MF4 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC11.72□□□□□ -0.53
CCDC140Q96MF4 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC11.72□□□□□ -0.53
CCDC140Q96MF4 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
CCDC140Q96MF4 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
CCDC140Q96MF4 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC11.72□□□□□ -0.53
CCDC140Q96MF4 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC11.72□□□□□ -0.53
CCDC140Q96MF4 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC11.72□□□□□ -0.53
CCDC140Q96MF4 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
CCDC140Q96MF4 LINC00552-201ENST00000625151 2579 ntBASIC11.72□□□□□ -0.53
CCDC140Q96MF4 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC11.71□□□□□ -0.53
CCDC140Q96MF4 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
CCDC140Q96MF4 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC11.71□□□□□ -0.53
CCDC140Q96MF4 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC11.71□□□□□ -0.53
CCDC140Q96MF4 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
CCDC140Q96MF4 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
CCDC140Q96MF4 XKR5-201ENST00000618742 4893 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
CCDC140Q96MF4 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
CCDC140Q96MF4 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
CCDC140Q96MF4 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC11.71□□□□□ -0.53
CCDC140Q96MF4 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
CCDC140Q96MF4 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
CCDC140Q96MF4 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC11.71□□□□□ -0.53
CCDC140Q96MF4 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC11.71□□□□□ -0.53
CCDC140Q96MF4 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC11.71□□□□□ -0.53
CCDC140Q96MF4 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
CCDC140Q96MF4 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
CCDC140Q96MF4 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
CCDC140Q96MF4 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
CCDC140Q96MF4 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
CCDC140Q96MF4 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC11.71□□□□□ -0.53
CCDC140Q96MF4 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
CCDC140Q96MF4 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC11.71□□□□□ -0.53
CCDC140Q96MF4 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
CCDC140Q96MF4 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
CCDC140Q96MF4 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
CCDC140Q96MF4 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC11.71□□□□□ -0.53
CCDC140Q96MF4 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
CCDC140Q96MF4 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
CCDC140Q96MF4 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
CCDC140Q96MF4 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
CCDC140Q96MF4 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC11.71□□□□□ -0.53
CCDC140Q96MF4 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
CCDC140Q96MF4 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC11.71□□□□□ -0.53
CCDC140Q96MF4 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC11.71□□□□□ -0.53
CCDC140Q96MF4 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC11.71□□□□□ -0.53
CCDC140Q96MF4 ACTG1P3-201ENST00000431775 1114 ntBASIC11.71□□□□□ -0.53
CCDC140Q96MF4 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC11.71□□□□□ -0.53
CCDC140Q96MF4 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
CCDC140Q96MF4 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC11.71□□□□□ -0.53
CCDC140Q96MF4 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC11.71□□□□□ -0.53
CCDC140Q96MF4 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC11.71□□□□□ -0.53
CCDC140Q96MF4 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC11.71□□□□□ -0.53
CCDC140Q96MF4 AP005018.1-201ENST00000525475 301 ntBASIC11.71□□□□□ -0.53
CCDC140Q96MF4 AC068587.3-201ENST00000526613 355 ntBASIC11.71□□□□□ -0.53
CCDC140Q96MF4 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
CCDC140Q96MF4 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC11.71□□□□□ -0.53
CCDC140Q96MF4 TDH-203ENST00000531764 1110 ntBASIC11.71□□□□□ -0.53
CCDC140Q96MF4 PTP4A1P2-201ENST00000546033 454 ntBASIC11.71□□□□□ -0.53
CCDC140Q96MF4 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
CCDC140Q96MF4 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC11.71□□□□□ -0.53
CCDC140Q96MF4 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC11.71□□□□□ -0.53
CCDC140Q96MF4 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC11.71□□□□□ -0.53
CCDC140Q96MF4 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC11.71□□□□□ -0.53
CCDC140Q96MF4 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC11.71□□□□□ -0.53
CCDC140Q96MF4 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC11.71□□□□□ -0.53
CCDC140Q96MF4 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
CCDC140Q96MF4 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Retrieved 100 of 98,524 protein–RNA pairs in 43.1 ms