Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
CLIP4Q8N3C7 ARPC4-TTLL3-201ENST00000397256 2466 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
CLIP4Q8N3C7 EIF4G1-201ENST00000342981 5667 ntAPPRIS ALT1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CLIP4Q8N3C7 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CLIP4Q8N3C7 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
CLIP4Q8N3C7 FGFR1-201ENST00000326324 3816 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
CLIP4Q8N3C7 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
CLIP4Q8N3C7 FGFR1-204ENST00000356207 3824 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
CLIP4Q8N3C7 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
CLIP4Q8N3C7 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
CLIP4Q8N3C7 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
CLIP4Q8N3C7 BAD-202ENST00000394531 631 ntTSL 3 BASIC14.3□□□□□ -0.12
CLIP4Q8N3C7 AL133267.1-201ENST00000398220 340 ntBASIC14.3□□□□□ -0.12
CLIP4Q8N3C7 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC14.3□□□□□ -0.12
CLIP4Q8N3C7 AC107890.1-201ENST00000422478 521 ntBASIC14.3□□□□□ -0.12
CLIP4Q8N3C7 AC092580.3-201ENST00000430932 139 ntBASIC14.3□□□□□ -0.12
CLIP4Q8N3C7 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC14.3□□□□□ -0.12
CLIP4Q8N3C7 SDHAP3-202ENST00000515467 728 ntBASIC14.3□□□□□ -0.12
CLIP4Q8N3C7 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC14.3□□□□□ -0.12
CLIP4Q8N3C7 BAD-207ENST00000544785 525 ntTSL 3 BASIC14.3□□□□□ -0.12
CLIP4Q8N3C7 AC044860.1-202ENST00000559481 777 ntBASIC14.3□□□□□ -0.12
CLIP4Q8N3C7 MPI-209ENST00000564003 1195 ntTSL 2 BASIC14.3□□□□□ -0.12
CLIP4Q8N3C7 AC140878.1-201ENST00000565277 250 ntBASIC14.3□□□□□ -0.12
CLIP4Q8N3C7 AC015911.4-201ENST00000588022 1070 ntBASIC14.3□□□□□ -0.12
CLIP4Q8N3C7 AP001160.2-201ENST00000596071 487 ntBASIC14.3□□□□□ -0.12
CLIP4Q8N3C7 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC14.3□□□□□ -0.12
CLIP4Q8N3C7 AC074044.1-201ENST00000609673 707 ntBASIC14.3□□□□□ -0.12
CLIP4Q8N3C7 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
CLIP4Q8N3C7 AC023511.2-201ENST00000618803 211 ntBASIC14.3□□□□□ -0.12
CLIP4Q8N3C7 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
CLIP4Q8N3C7 SEZ6L-209ENST00000529632 6534 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
CLIP4Q8N3C7 MBD1-201ENST00000269468 3259 ntAPPRIS P3 TSL 5 BASIC14.3□□□□□ -0.12
CLIP4Q8N3C7 P2RY1-201ENST00000305097 6747 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
CLIP4Q8N3C7 ADRB2-201ENST00000305988 3443 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
CLIP4Q8N3C7 WASH3P-207ENST00000560956 1394 ntBASIC14.3□□□□□ -0.12
CLIP4Q8N3C7 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC14.3□□□□□ -0.12
CLIP4Q8N3C7 KCP-206ENST00000613019 4853 ntAPPRIS P5 TSL 5 BASIC14.3□□□□□ -0.12
CLIP4Q8N3C7 DNAJC27-201ENST00000264711 4992 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CLIP4Q8N3C7 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CLIP4Q8N3C7 ZNF664-202ENST00000392404 4262 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CLIP4Q8N3C7 EP400NL-206ENST00000446190 3697 ntTSL 2 BASIC14.3□□□□□ -0.12
CLIP4Q8N3C7 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC14.3□□□□□ -0.12
CLIP4Q8N3C7 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CLIP4Q8N3C7 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CLIP4Q8N3C7 TMPRSS6-201ENST00000346753 3197 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
CLIP4Q8N3C7 PXDNL-201ENST00000356297 4805 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CLIP4Q8N3C7 AGO3-201ENST00000246314 3211 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
CLIP4Q8N3C7 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
CLIP4Q8N3C7 TRAK1-203ENST00000396175 5033 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
CLIP4Q8N3C7 TP73-209ENST00000603362 1668 ntTSL 5 BASIC14.3□□□□□ -0.12
CLIP4Q8N3C7 RFX2-222ENST00000592546 2578 ntAPPRIS ALT1 TSL 2 BASIC14.29□□□□□ -0.12
CLIP4Q8N3C7 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC14.29□□□□□ -0.12
CLIP4Q8N3C7 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLIP4Q8N3C7 PLAGL1-201ENST00000354765 3663 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLIP4Q8N3C7 MED12L-203ENST00000422248 2757 ntAPPRIS ALT2 TSL 2 BASIC14.29□□□□□ -0.12
CLIP4Q8N3C7 ZSCAN32-215ENST00000618425 2788 ntTSL 2 BASIC14.29□□□□□ -0.12
CLIP4Q8N3C7 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CLIP4Q8N3C7 PML-203ENST00000354026 2885 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLIP4Q8N3C7 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
CLIP4Q8N3C7 ATE1-203ENST00000369043 4900 ntAPPRIS ALT1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLIP4Q8N3C7 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CLIP4Q8N3C7 THSD4-201ENST00000261862 3133 ntTSL 5 BASIC14.29□□□□□ -0.12
CLIP4Q8N3C7 STK17B-201ENST00000263955 5287 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLIP4Q8N3C7 AP000845.1-201ENST00000581677 2131 ntBASIC14.29□□□□□ -0.12
CLIP4Q8N3C7 SLC4A11-202ENST00000380059 3229 ntAPPRIS ALT2 TSL 2 BASIC14.29□□□□□ -0.12
CLIP4Q8N3C7 ACKR3-201ENST00000272928 2203 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
CLIP4Q8N3C7 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC14.29□□□□□ -0.12
CLIP4Q8N3C7 PELP1-212ENST00000574876 3465 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLIP4Q8N3C7 NUP98-203ENST00000359171 7023 ntTSL 5 BASIC14.29□□□□□ -0.12
CLIP4Q8N3C7 STEAP2-202ENST00000394621 7033 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLIP4Q8N3C7 TMEM184B-202ENST00000361906 3611 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLIP4Q8N3C7 IL17RA-204ENST00000612619 8506 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
CLIP4Q8N3C7 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC14.29□□□□□ -0.12
CLIP4Q8N3C7 BRD1-205ENST00000457780 4997 ntTSL 5 BASIC14.29□□□□□ -0.12
CLIP4Q8N3C7 IMPACT-201ENST00000284202 3792 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLIP4Q8N3C7 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLIP4Q8N3C7 TOMM22P5-201ENST00000416399 439 ntBASIC14.29□□□□□ -0.12
CLIP4Q8N3C7 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC14.29□□□□□ -0.12
CLIP4Q8N3C7 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC14.29□□□□□ -0.12
CLIP4Q8N3C7 AC097493.3-201ENST00000509725 367 ntBASIC14.29□□□□□ -0.12
CLIP4Q8N3C7 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC14.29□□□□□ -0.12
CLIP4Q8N3C7 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC14.29□□□□□ -0.12
CLIP4Q8N3C7 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLIP4Q8N3C7 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
CLIP4Q8N3C7 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC14.29□□□□□ -0.12
CLIP4Q8N3C7 TBCB-211ENST00000589996 724 ntTSL 3 BASIC14.29□□□□□ -0.12
CLIP4Q8N3C7 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CLIP4Q8N3C7 PTPA-205ENST00000357197 2653 ntTSL 2 BASIC14.29□□□□□ -0.12
CLIP4Q8N3C7 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC14.29□□□□□ -0.12
CLIP4Q8N3C7 TTC39A-208ENST00000413473 2718 ntAPPRIS P4 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLIP4Q8N3C7 C1QTNF1-204ENST00000392445 2833 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
CLIP4Q8N3C7 MYD88-203ENST00000417037 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLIP4Q8N3C7 AC099521.3-201ENST00000624251 2938 ntBASIC14.29□□□□□ -0.12
CLIP4Q8N3C7 ABCG1-205ENST00000398449 2998 ntAPPRIS ALT1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLIP4Q8N3C7 GTF2I-212ENST00000573035 4548 ntAPPRIS P4 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLIP4Q8N3C7 AL121723.1-201ENST00000445194 1519 ntBASIC14.29□□□□□ -0.12
CLIP4Q8N3C7 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CLIP4Q8N3C7 SH3KBP1-205ENST00000397821 4731 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLIP4Q8N3C7 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
CLIP4Q8N3C7 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 53 ms