Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC14.04□□□□□ -0.16
RNF4P78317 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC14.04□□□□□ -0.16
RNF4P78317 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
RNF4P78317 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
RNF4P78317 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
RNF4P78317 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
RNF4P78317 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
RNF4P78317 TPM3P8-201ENST00000330554 643 ntBASIC14.04□□□□□ -0.16
RNF4P78317 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC14.04□□□□□ -0.16
RNF4P78317 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
RNF4P78317 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC14.04□□□□□ -0.16
RNF4P78317 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC14.04□□□□□ -0.16
RNF4P78317 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC14.04□□□□□ -0.16
RNF4P78317 KRT223P-202ENST00000449164 1292 ntBASIC14.04□□□□□ -0.16
RNF4P78317 AC119751.2-201ENST00000504529 210 ntBASIC14.04□□□□□ -0.16
RNF4P78317 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
RNF4P78317 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC14.04□□□□□ -0.16
RNF4P78317 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC14.04□□□□□ -0.16
RNF4P78317 ENPP7P14-201ENST00000621765 1040 ntBASIC14.04□□□□□ -0.16
RNF4P78317 AC079416.2-201ENST00000625035 1193 ntBASIC14.04□□□□□ -0.16
RNF4P78317 COX11-210ENST00000639671 696 ntBASIC14.04□□□□□ -0.16
RNF4P78317 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
RNF4P78317 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC14.04□□□□□ -0.16
RNF4P78317 RUNX1T1-246ENST00000523629 7537 ntAPPRIS P3 TSL 5 BASIC14.04□□□□□ -0.16
RNF4P78317 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
RNF4P78317 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
RNF4P78317 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
RNF4P78317 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC14.04□□□□□ -0.16
RNF4P78317 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
RNF4P78317 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
RNF4P78317 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
RNF4P78317 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
RNF4P78317 PARN-202ENST00000420015 2360 ntTSL 2 BASIC14.04□□□□□ -0.16
RNF4P78317 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC14.04□□□□□ -0.16
RNF4P78317 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
RNF4P78317 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
RNF4P78317 ZEB1-AS1-208ENST00000607166 2503 ntBASIC14.04□□□□□ -0.16
RNF4P78317 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
RNF4P78317 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC14.04□□□□□ -0.16
RNF4P78317 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
RNF4P78317 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
RNF4P78317 ZNF516-201ENST00000443185 8118 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
RNF4P78317 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
RNF4P78317 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC14.04□□□□□ -0.16
RNF4P78317 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC14.04□□□□□ -0.16
RNF4P78317 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
RNF4P78317 ZKSCAN2-201ENST00000328086 7523 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
RNF4P78317 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
RNF4P78317 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC14.04□□□□□ -0.16
RNF4P78317 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
RNF4P78317 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC14.04□□□□□ -0.16
RNF4P78317 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
RNF4P78317 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC14.03□□□□□ -0.16
RNF4P78317 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
RNF4P78317 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RNF4P78317 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
RNF4P78317 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
RNF4P78317 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC14.03□□□□□ -0.16
RNF4P78317 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC14.03□□□□□ -0.16
RNF4P78317 CAMKK2-201ENST00000324774 5598 ntAPPRIS P4 TSL 1 (best) BASIC14.03□□□□□ -0.16
RNF4P78317 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC14.03□□□□□ -0.16
RNF4P78317 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC14.03□□□□□ -0.16
RNF4P78317 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
RNF4P78317 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC14.03□□□□□ -0.16
RNF4P78317 HSPH1-201ENST00000320027 5191 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RNF4P78317 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
RNF4P78317 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
RNF4P78317 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
RNF4P78317 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC14.03□□□□□ -0.16
RNF4P78317 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC14.03□□□□□ -0.16
RNF4P78317 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
RNF4P78317 AC245100.3-201ENST00000441281 285 ntBASIC14.03□□□□□ -0.16
RNF4P78317 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC14.03□□□□□ -0.16
RNF4P78317 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RNF4P78317 AC078819.1-201ENST00000547454 765 ntBASIC14.03□□□□□ -0.16
RNF4P78317 AC012085.1-201ENST00000548270 765 ntBASIC14.03□□□□□ -0.16
RNF4P78317 AC079316.1-201ENST00000548397 411 ntBASIC14.03□□□□□ -0.16
RNF4P78317 MIR4259-201ENST00000584466 101 ntBASIC14.03□□□□□ -0.16
RNF4P78317 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC14.03□□□□□ -0.16
RNF4P78317 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC14.03□□□□□ -0.16
RNF4P78317 AC138951.2-201ENST00000623455 1161 ntBASIC14.03□□□□□ -0.16
RNF4P78317 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC14.03□□□□□ -0.16
RNF4P78317 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
RNF4P78317 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
RNF4P78317 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
RNF4P78317 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
RNF4P78317 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
RNF4P78317 IFRD1-205ENST00000429071 1938 ntTSL 2 BASIC14.03□□□□□ -0.16
RNF4P78317 PCDHGB8P-201ENST00000502926 1973 ntBASIC14.03□□□□□ -0.16
RNF4P78317 KIAA1468-202ENST00000398130 6178 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
RNF4P78317 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
RNF4P78317 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RNF4P78317 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC14.03□□□□□ -0.16
RNF4P78317 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC14.03□□□□□ -0.16
RNF4P78317 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC14.03□□□□□ -0.16
RNF4P78317 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RNF4P78317 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
RNF4P78317 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RNF4P78317 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RNF4P78317 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 69.6 ms