Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
SDC1P18827 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
SDC1P18827 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
SDC1P18827 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC14.43□□□□□ -0.1
SDC1P18827 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC14.43□□□□□ -0.1
SDC1P18827 CNOT10-201ENST00000328834 2815 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
SDC1P18827 IARS2-201ENST00000366922 3560 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
SDC1P18827 TTLL10-AS1-201ENST00000379317 3532 ntTSL 2 BASIC14.43□□□□□ -0.1
SDC1P18827 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC14.43□□□□□ -0.1
SDC1P18827 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
SDC1P18827 ZNF785-202ENST00000470110 2867 ntAPPRIS ALT2 TSL 2 BASIC14.43□□□□□ -0.1
SDC1P18827 FANCG-201ENST00000378643 2631 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
SDC1P18827 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC14.43□□□□□ -0.1
SDC1P18827 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
SDC1P18827 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC14.43□□□□□ -0.1
SDC1P18827 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
SDC1P18827 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
SDC1P18827 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
SDC1P18827 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
SDC1P18827 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
SDC1P18827 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
SDC1P18827 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
SDC1P18827 GNAQP1-201ENST00000444815 1067 ntBASIC14.43□□□□□ -0.1
SDC1P18827 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC14.43□□□□□ -0.1
SDC1P18827 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC14.43□□□□□ -0.1
SDC1P18827 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC14.43□□□□□ -0.1
SDC1P18827 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC14.43□□□□□ -0.1
SDC1P18827 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC14.43□□□□□ -0.1
SDC1P18827 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
SDC1P18827 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC14.43□□□□□ -0.1
SDC1P18827 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC14.43□□□□□ -0.1
SDC1P18827 AL356805.1-201ENST00000556383 341 ntTSL 3 BASIC14.43□□□□□ -0.1
SDC1P18827 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC14.43□□□□□ -0.1
SDC1P18827 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC14.43□□□□□ -0.1
SDC1P18827 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
SDC1P18827 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC14.43□□□□□ -0.1
SDC1P18827 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC14.43□□□□□ -0.1
SDC1P18827 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC14.43□□□□□ -0.1
SDC1P18827 PRSS30P-206ENST00000641773 873 ntBASIC14.43□□□□□ -0.1
SDC1P18827 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC14.43□□□□□ -0.1
SDC1P18827 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC14.43□□□□□ -0.1
SDC1P18827 PREP-201ENST00000369110 2905 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
SDC1P18827 POU5F1-204ENST00000471529 1723 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
SDC1P18827 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
SDC1P18827 PUS1-202ENST00000376649 4094 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
SDC1P18827 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
SDC1P18827 LINC00163-201ENST00000434081 2155 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
SDC1P18827 DUSP27-201ENST00000271385 3597 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
SDC1P18827 TDRD5-204ENST00000444136 3946 ntAPPRIS ALT1 TSL 1 (best) BASIC14.43□□□□□ -0.1
SDC1P18827 GPAT3-201ENST00000264409 2625 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
SDC1P18827 TKT-201ENST00000296289 1931 ntTSL 5 BASIC14.43□□□□□ -0.1
SDC1P18827 HSPA7-201ENST00000445535 1927 ntBASIC14.43□□□□□ -0.1
SDC1P18827 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
SDC1P18827 INTS4P2-202ENST00000614726 2019 ntBASIC14.42□□□□□ -0.1
SDC1P18827 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC14.42□□□□□ -0.1
SDC1P18827 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
SDC1P18827 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
SDC1P18827 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
SDC1P18827 POMT1-204ENST00000402686 3038 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SDC1P18827 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SDC1P18827 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SDC1P18827 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
SDC1P18827 C1R-202ENST00000536053 2347 ntTSL 2 BASIC14.42□□□□□ -0.1
SDC1P18827 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
SDC1P18827 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
SDC1P18827 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SDC1P18827 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SDC1P18827 AMT-232ENST00000636199 1546 ntTSL 5 BASIC14.42□□□□□ -0.1
SDC1P18827 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
SDC1P18827 AL354702.1-201ENST00000442006 1960 ntBASIC14.42□□□□□ -0.1
SDC1P18827 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC14.42□□□□□ -0.1
SDC1P18827 ADGRG2-207ENST00000379869 4768 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
SDC1P18827 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC14.42□□□□□ -0.1
SDC1P18827 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
SDC1P18827 API5-203ENST00000455725 2257 ntTSL 2 BASIC14.42□□□□□ -0.1
SDC1P18827 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
SDC1P18827 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
SDC1P18827 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
SDC1P18827 MEP1AP4-201ENST00000423244 1087 ntBASIC14.42□□□□□ -0.1
SDC1P18827 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SDC1P18827 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SDC1P18827 AC120045.2-201ENST00000567334 178 ntBASIC14.42□□□□□ -0.1
SDC1P18827 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
SDC1P18827 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC14.42□□□□□ -0.1
SDC1P18827 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC14.42□□□□□ -0.1
SDC1P18827 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC14.42□□□□□ -0.1
SDC1P18827 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
SDC1P18827 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC14.42□□□□□ -0.1
SDC1P18827 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC14.42□□□□□ -0.1
SDC1P18827 AC007431.3-201ENST00000623221 587 ntBASIC14.42□□□□□ -0.1
SDC1P18827 BX539320.1-201ENST00000623759 877 ntBASIC14.42□□□□□ -0.1
SDC1P18827 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SDC1P18827 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC14.42□□□□□ -0.1
SDC1P18827 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
SDC1P18827 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SDC1P18827 GPANK1-205ENST00000375906 2793 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
SDC1P18827 SLC22A15-202ENST00000369503 4720 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SDC1P18827 SPOCK3-201ENST00000357154 2986 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
SDC1P18827 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC14.42□□□□□ -0.1
SDC1P18827 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC14.42□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 49.1 ms