Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 AL139420.2-201ENST00000449439 410 ntTSL 3 BASIC17.78■□□□□ 0.44
SMC1BQ8NDV3 DUX4L47-201ENST00000566374 394 ntBASIC17.78■□□□□ 0.44
SMC1BQ8NDV3 TMEM98-205ENST00000578289 806 ntTSL 3 BASIC17.78■□□□□ 0.44
SMC1BQ8NDV3 AP000322.3-201ENST00000608665 388 ntBASIC17.78■□□□□ 0.44
SMC1BQ8NDV3 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
SMC1BQ8NDV3 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SMC1BQ8NDV3 FMR1-215ENST00000616382 1648 ntTSL 5 BASIC17.78■□□□□ 0.44
SMC1BQ8NDV3 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
SMC1BQ8NDV3 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SMC1BQ8NDV3 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SMC1BQ8NDV3 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SMC1BQ8NDV3 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SMC1BQ8NDV3 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC17.78■□□□□ 0.44
SMC1BQ8NDV3 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
SMC1BQ8NDV3 CTSV-201ENST00000259470 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SMC1BQ8NDV3 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
SMC1BQ8NDV3 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
SMC1BQ8NDV3 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
SMC1BQ8NDV3 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
SMC1BQ8NDV3 RAN-210ENST00000541630 1475 ntTSL 2 BASIC17.77■□□□□ 0.44
SMC1BQ8NDV3 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SMC1BQ8NDV3 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC17.77■□□□□ 0.44
SMC1BQ8NDV3 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.44
SMC1BQ8NDV3 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
SMC1BQ8NDV3 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
SMC1BQ8NDV3 NHP2P1-201ENST00000335274 462 ntBASIC17.77■□□□□ 0.44
SMC1BQ8NDV3 CMTM5-202ENST00000342473 725 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
SMC1BQ8NDV3 RPA3-202ENST00000396682 847 ntAPPRIS P1 TSL 3 BASIC17.77■□□□□ 0.44
SMC1BQ8NDV3 CMTM5-205ENST00000397227 818 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
SMC1BQ8NDV3 HSPB7-203ENST00000406363 648 ntAPPRIS ALT1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SMC1BQ8NDV3 HLA-DPA2-205ENST00000433582 733 ntBASIC17.77■□□□□ 0.44
SMC1BQ8NDV3 DPY19L2P5-201ENST00000456300 331 ntBASIC17.77■□□□□ 0.44
SMC1BQ8NDV3 LINC01598-205ENST00000508763 719 ntTSL 5 BASIC17.77■□□□□ 0.44
SMC1BQ8NDV3 LINC02062-201ENST00000513175 478 ntTSL 3 BASIC17.77■□□□□ 0.44
SMC1BQ8NDV3 AC129102.1-201ENST00000535755 525 ntTSL 4 BASIC17.77■□□□□ 0.44
SMC1BQ8NDV3 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC17.77■□□□□ 0.44
SMC1BQ8NDV3 CMTM5-208ENST00000555731 831 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
SMC1BQ8NDV3 AC015712.5-201ENST00000558568 564 ntTSL 2 BASIC17.77■□□□□ 0.44
SMC1BQ8NDV3 SNX11-210ENST00000582104 1282 ntTSL 2 BASIC17.77■□□□□ 0.44
SMC1BQ8NDV3 AC008133.1-201ENST00000584688 557 ntTSL 4 BASIC17.77■□□□□ 0.44
SMC1BQ8NDV3 AC023090.1-201ENST00000592906 502 ntTSL 3 BASIC17.77■□□□□ 0.44
SMC1BQ8NDV3 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC17.77■□□□□ 0.44
SMC1BQ8NDV3 TP53-221ENST00000615910 1149 ntTSL 5 BASIC17.77■□□□□ 0.44
SMC1BQ8NDV3 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC17.77■□□□□ 0.44
SMC1BQ8NDV3 KRT8P31-201ENST00000504812 1408 ntBASIC17.77■□□□□ 0.44
SMC1BQ8NDV3 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
SMC1BQ8NDV3 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
SMC1BQ8NDV3 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SMC1BQ8NDV3 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
SMC1BQ8NDV3 AC060834.1-201ENST00000443027 2032 ntBASIC17.77■□□□□ 0.43
SMC1BQ8NDV3 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
SMC1BQ8NDV3 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC17.77■□□□□ 0.43
SMC1BQ8NDV3 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
SMC1BQ8NDV3 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC17.76■□□□□ 0.43
SMC1BQ8NDV3 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC17.76■□□□□ 0.43
SMC1BQ8NDV3 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
SMC1BQ8NDV3 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC17.76■□□□□ 0.43
SMC1BQ8NDV3 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC17.76■□□□□ 0.43
SMC1BQ8NDV3 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SMC1BQ8NDV3 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
SMC1BQ8NDV3 ADSL-201ENST00000216194 1620 ntTSL 2 BASIC17.76■□□□□ 0.43
SMC1BQ8NDV3 CNN1-201ENST00000252456 1633 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SMC1BQ8NDV3 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SMC1BQ8NDV3 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SMC1BQ8NDV3 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
SMC1BQ8NDV3 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
SMC1BQ8NDV3 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
SMC1BQ8NDV3 EDNRB-204ENST00000626030 1571 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
SMC1BQ8NDV3 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SMC1BQ8NDV3 SGCE-204ENST00000428696 1409 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
SMC1BQ8NDV3 C2orf70-201ENST00000329615 731 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
SMC1BQ8NDV3 FAM92A-202ENST00000423990 914 ntTSL 5 BASIC17.76■□□□□ 0.43
SMC1BQ8NDV3 AC012507.1-201ENST00000454890 600 ntTSL 4 BASIC17.76■□□□□ 0.43
SMC1BQ8NDV3 RPS6KA2-AS1-201ENST00000455390 627 ntTSL 5 BASIC17.76■□□□□ 0.43
SMC1BQ8NDV3 S100A2-205ENST00000487430 752 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SMC1BQ8NDV3 PGAM1P12-201ENST00000505622 748 ntBASIC17.76■□□□□ 0.43
SMC1BQ8NDV3 AC114947.1-202ENST00000514136 344 ntBASIC17.76■□□□□ 0.43
SMC1BQ8NDV3 AC069185.1-202ENST00000533405 471 ntTSL 3 BASIC17.76■□□□□ 0.43
SMC1BQ8NDV3 ABHD17AP9-201ENST00000561925 548 ntBASIC17.76■□□□□ 0.43
SMC1BQ8NDV3 MIR4313-201ENST00000580760 101 ntBASIC17.76■□□□□ 0.43
SMC1BQ8NDV3 AC012073.1-201ENST00000606114 1108 ntBASIC17.76■□□□□ 0.43
SMC1BQ8NDV3 CD79B-201ENST00000006750 1269 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SMC1BQ8NDV3 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC17.76■□□□□ 0.43
SMC1BQ8NDV3 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
SMC1BQ8NDV3 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SMC1BQ8NDV3 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SMC1BQ8NDV3 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SMC1BQ8NDV3 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
SMC1BQ8NDV3 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SMC1BQ8NDV3 ATF4-203ENST00000404241 1910 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
SMC1BQ8NDV3 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
SMC1BQ8NDV3 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
SMC1BQ8NDV3 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
SMC1BQ8NDV3 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC17.76■□□□□ 0.43
SMC1BQ8NDV3 CAMTA1-201ENST00000303635 8444 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SMC1BQ8NDV3 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
SMC1BQ8NDV3 LINC01165-201ENST00000445190 1623 ntBASIC17.76■□□□□ 0.43
SMC1BQ8NDV3 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
SMC1BQ8NDV3 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SMC1BQ8NDV3 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC17.76■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 68.9 ms