Protein–RNA interactions for Protein: Q7Z3Y7

KRT28, Keratin, type I cytoskeletal 28, humanhuman

Predictions only

Length 464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT28Q7Z3Y7 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC20.12■□□□□ 0.81
KRT28Q7Z3Y7 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC20.12■□□□□ 0.81
KRT28Q7Z3Y7 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC20.11■□□□□ 0.81
KRT28Q7Z3Y7 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
KRT28Q7Z3Y7 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
KRT28Q7Z3Y7 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
KRT28Q7Z3Y7 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
KRT28Q7Z3Y7 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC20.11■□□□□ 0.81
KRT28Q7Z3Y7 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC20.11■□□□□ 0.81
KRT28Q7Z3Y7 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
KRT28Q7Z3Y7 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC20.11■□□□□ 0.81
KRT28Q7Z3Y7 NDUFB6-203ENST00000379847 1366 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
KRT28Q7Z3Y7 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC20.11■□□□□ 0.81
KRT28Q7Z3Y7 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
KRT28Q7Z3Y7 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
KRT28Q7Z3Y7 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
KRT28Q7Z3Y7 REXO1L2P-201ENST00000425429 2069 ntBASIC20.11■□□□□ 0.81
KRT28Q7Z3Y7 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
KRT28Q7Z3Y7 PLAC8L1-201ENST00000311450 638 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
KRT28Q7Z3Y7 AL590093.1-201ENST00000416119 623 ntTSL 5 BASIC20.11■□□□□ 0.81
KRT28Q7Z3Y7 AC096649.1-201ENST00000449168 497 ntTSL 3 BASIC20.11■□□□□ 0.81
KRT28Q7Z3Y7 TP53AIP1-201ENST00000458238 777 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
KRT28Q7Z3Y7 ALG1L13P-202ENST00000519320 584 ntBASIC20.11■□□□□ 0.81
KRT28Q7Z3Y7 ASNSD1-206ENST00000607062 968 ntTSL 5 BASIC20.11■□□□□ 0.81
KRT28Q7Z3Y7 LINC00923-205ENST00000615399 932 ntTSL 5 BASIC20.11■□□□□ 0.81
KRT28Q7Z3Y7 GLUD1P2-203ENST00000631118 486 ntTSL 3 BASIC20.11■□□□□ 0.81
KRT28Q7Z3Y7 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC20.11■□□□□ 0.81
KRT28Q7Z3Y7 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC20.11■□□□□ 0.81
KRT28Q7Z3Y7 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC20.11■□□□□ 0.81
KRT28Q7Z3Y7 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
KRT28Q7Z3Y7 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
KRT28Q7Z3Y7 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC20.11■□□□□ 0.81
KRT28Q7Z3Y7 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
KRT28Q7Z3Y7 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
KRT28Q7Z3Y7 PCDHB19P-201ENST00000570871 2371 ntBASIC20.1■□□□□ 0.81
KRT28Q7Z3Y7 Z84468.1-201ENST00000626321 1408 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
KRT28Q7Z3Y7 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
KRT28Q7Z3Y7 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
KRT28Q7Z3Y7 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC20.1■□□□□ 0.81
KRT28Q7Z3Y7 TOMM22-201ENST00000216034 2040 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
KRT28Q7Z3Y7 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC20.1■□□□□ 0.81
KRT28Q7Z3Y7 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
KRT28Q7Z3Y7 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
KRT28Q7Z3Y7 LINC00470-210ENST00000584090 1334 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
KRT28Q7Z3Y7 KLK3-216ENST00000617027 1341 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
KRT28Q7Z3Y7 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC20.1■□□□□ 0.81
KRT28Q7Z3Y7 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
KRT28Q7Z3Y7 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
KRT28Q7Z3Y7 HLA-DMA-203ENST00000395305 777 ntBASIC20.1■□□□□ 0.81
KRT28Q7Z3Y7 INS-IGF2-202ENST00000397270 828 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
KRT28Q7Z3Y7 IDS-203ENST00000428056 1213 ntTSL 2 BASIC20.1■□□□□ 0.81
KRT28Q7Z3Y7 CSTF3-202ENST00000431742 715 ntTSL 2 BASIC20.1■□□□□ 0.81
KRT28Q7Z3Y7 AL139008.1-201ENST00000437894 228 ntBASIC20.1■□□□□ 0.81
KRT28Q7Z3Y7 AC092638.2-201ENST00000441105 947 ntBASIC20.1■□□□□ 0.81
KRT28Q7Z3Y7 AL020996.1-201ENST00000442055 435 ntTSL 2 BASIC20.1■□□□□ 0.81
KRT28Q7Z3Y7 AL354861.1-201ENST00000445213 355 ntBASIC20.1■□□□□ 0.81
KRT28Q7Z3Y7 MEF2C-AS2-201ENST00000510274 463 ntTSL 5 BASIC20.1■□□□□ 0.81
KRT28Q7Z3Y7 AC129102.1-201ENST00000535755 525 ntTSL 4 BASIC20.1■□□□□ 0.81
KRT28Q7Z3Y7 CR383656.3-201ENST00000551315 183 ntBASIC20.1■□□□□ 0.81
KRT28Q7Z3Y7 TCL1A-205ENST00000555202 717 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
KRT28Q7Z3Y7 AL355916.2-201ENST00000556543 593 ntTSL 4 BASIC20.1■□□□□ 0.81
KRT28Q7Z3Y7 FAM104A-204ENST00000580032 451 ntTSL 3 BASIC20.1■□□□□ 0.81
KRT28Q7Z3Y7 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
KRT28Q7Z3Y7 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
KRT28Q7Z3Y7 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
KRT28Q7Z3Y7 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
KRT28Q7Z3Y7 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
KRT28Q7Z3Y7 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
KRT28Q7Z3Y7 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
KRT28Q7Z3Y7 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC20.1■□□□□ 0.81
KRT28Q7Z3Y7 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
KRT28Q7Z3Y7 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
KRT28Q7Z3Y7 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC20.1■□□□□ 0.81
KRT28Q7Z3Y7 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
KRT28Q7Z3Y7 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
KRT28Q7Z3Y7 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
KRT28Q7Z3Y7 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
KRT28Q7Z3Y7 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
KRT28Q7Z3Y7 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
KRT28Q7Z3Y7 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
KRT28Q7Z3Y7 AC007292.2-201ENST00000593524 1812 ntBASIC20.09■□□□□ 0.81
KRT28Q7Z3Y7 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC20.09■□□□□ 0.81
KRT28Q7Z3Y7 RASGEF1B-202ENST00000335927 1756 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
KRT28Q7Z3Y7 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
KRT28Q7Z3Y7 HLA-DQB1-202ENST00000399079 1501 ntBASIC20.09■□□□□ 0.81
KRT28Q7Z3Y7 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
KRT28Q7Z3Y7 AC211486.1-201ENST00000275590 980 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
KRT28Q7Z3Y7 TTPAL-203ENST00000372906 1139 ntTSL 3 BASIC20.09■□□□□ 0.81
KRT28Q7Z3Y7 SERF2-206ENST00000409291 807 ntTSL 3 BASIC20.09■□□□□ 0.81
KRT28Q7Z3Y7 CNRIP1-202ENST00000409559 644 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
KRT28Q7Z3Y7 HNRNPA1P27-201ENST00000412087 955 ntBASIC20.09■□□□□ 0.81
KRT28Q7Z3Y7 AL354893.2-201ENST00000423075 529 ntTSL 5 BASIC20.09■□□□□ 0.81
KRT28Q7Z3Y7 RHEB-207ENST00000496004 744 ntTSL 2 BASIC20.09■□□□□ 0.81
KRT28Q7Z3Y7 C8orf31-207ENST00000524181 1199 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
KRT28Q7Z3Y7 MT3-203ENST00000565838 421 ntTSL 3 BASIC20.09■□□□□ 0.81
KRT28Q7Z3Y7 TMEM98-205ENST00000578289 806 ntTSL 3 BASIC20.09■□□□□ 0.81
KRT28Q7Z3Y7 RN7SL470P-201ENST00000583069 259 ntBASIC20.09■□□□□ 0.81
KRT28Q7Z3Y7 AC006158.1-201ENST00000610661 249 ntBASIC20.09■□□□□ 0.81
KRT28Q7Z3Y7 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
KRT28Q7Z3Y7 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms