Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC18.72■□□□□ 0.59
RC3H1Q5TC82 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
RC3H1Q5TC82 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
RC3H1Q5TC82 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC18.72■□□□□ 0.59
RC3H1Q5TC82 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
RC3H1Q5TC82 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
RC3H1Q5TC82 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
RC3H1Q5TC82 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
RC3H1Q5TC82 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
RC3H1Q5TC82 ELOVL1-201ENST00000372458 1477 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
RC3H1Q5TC82 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
RC3H1Q5TC82 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
RC3H1Q5TC82 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
RC3H1Q5TC82 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC18.71■□□□□ 0.59
RC3H1Q5TC82 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
RC3H1Q5TC82 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
RC3H1Q5TC82 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
RC3H1Q5TC82 CMTM5-201ENST00000339180 1173 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
RC3H1Q5TC82 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
RC3H1Q5TC82 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC18.71■□□□□ 0.59
RC3H1Q5TC82 AC092265.1-201ENST00000422638 498 ntTSL 2 BASIC18.71■□□□□ 0.59
RC3H1Q5TC82 AC097103.2-201ENST00000504670 602 ntTSL 2 BASIC18.71■□□□□ 0.59
RC3H1Q5TC82 AC105254.1-201ENST00000507782 621 ntTSL 4 BASIC18.71■□□□□ 0.59
RC3H1Q5TC82 POLD4-206ENST00000530584 899 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
RC3H1Q5TC82 POLD4-208ENST00000532830 904 ntTSL 3 BASIC18.71■□□□□ 0.59
RC3H1Q5TC82 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC18.71■□□□□ 0.59
RC3H1Q5TC82 AP000911.2-201ENST00000534330 502 ntBASIC18.71■□□□□ 0.59
RC3H1Q5TC82 SDHAF2-206ENST00000542074 835 ntTSL 2 BASIC18.71■□□□□ 0.59
RC3H1Q5TC82 AC141586.1-203ENST00000567242 366 ntBASIC18.71■□□□□ 0.59
RC3H1Q5TC82 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
RC3H1Q5TC82 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
RC3H1Q5TC82 THUMPD3-AS1-212ENST00000520447 1809 ntTSL 5 BASIC18.71■□□□□ 0.59
RC3H1Q5TC82 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC18.71■□□□□ 0.59
RC3H1Q5TC82 PCDHB19P-201ENST00000570871 2371 ntBASIC18.71■□□□□ 0.59
RC3H1Q5TC82 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC18.71■□□□□ 0.59
RC3H1Q5TC82 PKD1P1-201ENST00000458669 6805 ntBASIC18.71■□□□□ 0.59
RC3H1Q5TC82 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
RC3H1Q5TC82 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
RC3H1Q5TC82 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
RC3H1Q5TC82 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
RC3H1Q5TC82 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC18.71■□□□□ 0.59
RC3H1Q5TC82 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
RC3H1Q5TC82 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC18.71■□□□□ 0.58
RC3H1Q5TC82 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC18.71■□□□□ 0.58
RC3H1Q5TC82 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
RC3H1Q5TC82 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC18.7■□□□□ 0.58
RC3H1Q5TC82 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC18.7■□□□□ 0.58
RC3H1Q5TC82 SERPINB9P1-202ENST00000545177 1375 ntTSL 3 BASIC18.7■□□□□ 0.58
RC3H1Q5TC82 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
RC3H1Q5TC82 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
RC3H1Q5TC82 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
RC3H1Q5TC82 PLAC8L1-201ENST00000311450 638 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
RC3H1Q5TC82 OGFR-AS1-201ENST00000431361 668 ntTSL 2 BASIC18.7■□□□□ 0.58
RC3H1Q5TC82 AL157788.1-201ENST00000437838 229 ntTSL 3 BASIC18.7■□□□□ 0.58
RC3H1Q5TC82 OR2R1P-201ENST00000441404 914 ntBASIC18.7■□□□□ 0.58
RC3H1Q5TC82 AC108199.1-201ENST00000504249 508 ntTSL 3 BASIC18.7■□□□□ 0.58
RC3H1Q5TC82 AP003398.1-201ENST00000531124 318 ntBASIC18.7■□□□□ 0.58
RC3H1Q5TC82 MESP2-203ENST00000560219 859 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
RC3H1Q5TC82 AC008687.1-201ENST00000591656 786 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
RC3H1Q5TC82 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
RC3H1Q5TC82 AC107464.3-201ENST00000609172 737 ntBASIC18.7■□□□□ 0.58
RC3H1Q5TC82 HIST1H4A-201ENST00000617569 312 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
RC3H1Q5TC82 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
RC3H1Q5TC82 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC18.7■□□□□ 0.58
RC3H1Q5TC82 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC18.7■□□□□ 0.58
RC3H1Q5TC82 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC18.7■□□□□ 0.58
RC3H1Q5TC82 COLEC11-203ENST00000382062 1633 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
RC3H1Q5TC82 TMEM144-209ENST00000509278 1633 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
RC3H1Q5TC82 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
RC3H1Q5TC82 DLK1-201ENST00000331224 1324 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
RC3H1Q5TC82 FAM69C-202ENST00000400291 1329 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
RC3H1Q5TC82 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
RC3H1Q5TC82 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
RC3H1Q5TC82 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC18.7■□□□□ 0.58
RC3H1Q5TC82 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
RC3H1Q5TC82 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC18.69■□□□□ 0.58
RC3H1Q5TC82 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
RC3H1Q5TC82 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
RC3H1Q5TC82 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC18.69■□□□□ 0.58
RC3H1Q5TC82 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
RC3H1Q5TC82 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC18.69■□□□□ 0.58
RC3H1Q5TC82 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC18.69■□□□□ 0.58
RC3H1Q5TC82 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC18.69■□□□□ 0.58
RC3H1Q5TC82 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
RC3H1Q5TC82 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
RC3H1Q5TC82 AC013726.1-201ENST00000563747 2285 ntBASIC18.69■□□□□ 0.58
RC3H1Q5TC82 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
RC3H1Q5TC82 Metazoa_SRP.6-201ENST00000366384 298 ntBASIC18.69■□□□□ 0.58
RC3H1Q5TC82 HLA-DMA-203ENST00000395305 777 ntBASIC18.69■□□□□ 0.58
RC3H1Q5TC82 NUBP1-202ENST00000433392 1185 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
RC3H1Q5TC82 AC091179.2-201ENST00000495536 532 ntTSL 3 BASIC18.69■□□□□ 0.58
RC3H1Q5TC82 ALG1L6P-201ENST00000515248 758 ntBASIC18.69■□□□□ 0.58
RC3H1Q5TC82 LINC02176-201ENST00000569104 598 ntTSL 4 BASIC18.69■□□□□ 0.58
RC3H1Q5TC82 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC18.69■□□□□ 0.58
RC3H1Q5TC82 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC18.69■□□□□ 0.58
RC3H1Q5TC82 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
RC3H1Q5TC82 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
RC3H1Q5TC82 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
RC3H1Q5TC82 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
RC3H1Q5TC82 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 48.3 ms