Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC14.91□□□□□ -0.02
CXCL12P48061 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC14.91□□□□□ -0.02
CXCL12P48061 KRT18P9-201ENST00000604826 1300 ntBASIC14.91□□□□□ -0.02
CXCL12P48061 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CXCL12P48061 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
CXCL12P48061 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CXCL12P48061 SUCO-204ENST00000608151 5790 ntTSL 5 BASIC14.9□□□□□ -0.02
CXCL12P48061 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC14.9□□□□□ -0.02
CXCL12P48061 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
CXCL12P48061 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
CXCL12P48061 AL024498.2-201ENST00000480294 1589 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
CXCL12P48061 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC14.9□□□□□ -0.02
CXCL12P48061 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CXCL12P48061 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
CXCL12P48061 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CXCL12P48061 FHL2-206ENST00000408995 1367 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
CXCL12P48061 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
CXCL12P48061 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
CXCL12P48061 CRYBB1-201ENST00000215939 1102 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CXCL12P48061 APOA1-202ENST00000359492 932 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
CXCL12P48061 IGHV3-48-201ENST00000390624 432 ntAPPRIS P1 BASIC14.9□□□□□ -0.02
CXCL12P48061 GEMIN7-202ENST00000391951 716 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
CXCL12P48061 SETD7-203ENST00000406354 1127 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
CXCL12P48061 AL118508.1-202ENST00000411595 709 ntTSL 2 BASIC14.9□□□□□ -0.02
CXCL12P48061 AL157407.1-201ENST00000435784 904 ntBASIC14.9□□□□□ -0.02
CXCL12P48061 PIN4P1-201ENST00000451079 396 ntBASIC14.9□□□□□ -0.02
CXCL12P48061 CICP12-201ENST00000455801 843 ntBASIC14.9□□□□□ -0.02
CXCL12P48061 AC018463.1-201ENST00000456674 917 ntBASIC14.9□□□□□ -0.02
CXCL12P48061 ALG3P1-201ENST00000508806 1114 ntBASIC14.9□□□□□ -0.02
CXCL12P48061 AC011773.1-201ENST00000520129 468 ntTSL 5 BASIC14.9□□□□□ -0.02
CXCL12P48061 PTK2-225ENST00000520892 571 ntTSL 4 BASIC14.9□□□□□ -0.02
CXCL12P48061 AP003398.1-201ENST00000531124 318 ntBASIC14.9□□□□□ -0.02
CXCL12P48061 PHBP15-201ENST00000574228 665 ntBASIC14.9□□□□□ -0.02
CXCL12P48061 UPF3AP2-202ENST00000578315 730 ntTSL 5 BASIC14.9□□□□□ -0.02
CXCL12P48061 SNRPD2-206ENST00000588301 702 ntAPPRIS P1 TSL 3 BASIC14.9□□□□□ -0.02
CXCL12P48061 HPN-206ENST00000597419 1212 ntTSL 5 BASIC14.9□□□□□ -0.02
CXCL12P48061 MEG3_2.1-201ENST00000611456 105 ntBASIC14.9□□□□□ -0.02
CXCL12P48061 PRSS45-202ENST00000620911 1041 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
CXCL12P48061 MBD3L2B-201ENST00000636986 860 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CXCL12P48061 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC14.9□□□□□ -0.02
CXCL12P48061 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
CXCL12P48061 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
CXCL12P48061 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC14.9□□□□□ -0.02
CXCL12P48061 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
CXCL12P48061 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC14.9□□□□□ -0.02
CXCL12P48061 TEX264-201ENST00000341333 1340 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
CXCL12P48061 CASP6-202ENST00000352981 1347 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
CXCL12P48061 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CXCL12P48061 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CXCL12P48061 P2RX3-201ENST00000263314 1831 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CXCL12P48061 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC14.89□□□□□ -0.03
CXCL12P48061 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC14.89□□□□□ -0.03
CXCL12P48061 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CXCL12P48061 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
CXCL12P48061 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
CXCL12P48061 SLC9A7P1-202ENST00000556476 2239 ntBASIC14.89□□□□□ -0.03
CXCL12P48061 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
CXCL12P48061 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC14.89□□□□□ -0.03
CXCL12P48061 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
CXCL12P48061 RASSF6-202ENST00000335049 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
CXCL12P48061 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
CXCL12P48061 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC14.89□□□□□ -0.03
CXCL12P48061 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CXCL12P48061 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
CXCL12P48061 PCDHA14-201ENST00000506751 2298 ntBASIC14.89□□□□□ -0.03
CXCL12P48061 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CXCL12P48061 AC015909.3-201ENST00000572855 1794 ntBASIC14.89□□□□□ -0.03
CXCL12P48061 SPACA3-201ENST00000269053 817 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
CXCL12P48061 PPA2-204ENST00000354147 667 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
CXCL12P48061 MBP-201ENST00000354542 575 ntTSL 2 BASIC14.89□□□□□ -0.03
CXCL12P48061 SOD2-202ENST00000367054 815 ntTSL 2 BASIC14.89□□□□□ -0.03
CXCL12P48061 IGLJ3-201ENST00000390324 176 ntAPPRIS P1 BASIC14.89□□□□□ -0.03
CXCL12P48061 CD300A-204ENST00000392625 1163 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
CXCL12P48061 ZNF226-203ENST00000413984 716 ntTSL 3 BASIC14.89□□□□□ -0.03
CXCL12P48061 SLC13A3-205ENST00000417157 876 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
CXCL12P48061 MPC1L-201ENST00000423387 571 ntAPPRIS P1 BASIC14.89□□□□□ -0.03
CXCL12P48061 PPA2-205ENST00000432483 859 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
CXCL12P48061 AL627422.1-201ENST00000434104 580 ntBASIC14.89□□□□□ -0.03
CXCL12P48061 AL591242.1-203ENST00000434329 374 ntTSL 3 BASIC14.89□□□□□ -0.03
CXCL12P48061 LINC00322-201ENST00000450205 699 ntTSL 3 BASIC14.89□□□□□ -0.03
CXCL12P48061 AC006122.1-201ENST00000493323 440 ntBASIC14.89□□□□□ -0.03
CXCL12P48061 AC040162.4-201ENST00000574912 1185 ntAPPRIS P1 TSL 3 BASIC14.89□□□□□ -0.03
CXCL12P48061 SPACA3-205ENST00000580599 949 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
CXCL12P48061 MUC1-226ENST00000614519 1093 ntTSL 2 BASIC14.89□□□□□ -0.03
CXCL12P48061 MIR6756-201ENST00000616240 63 ntBASIC14.89□□□□□ -0.03
CXCL12P48061 AC092299.1-201ENST00000632679 757 ntBASIC14.89□□□□□ -0.03
CXCL12P48061 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
CXCL12P48061 REXO1L4P-201ENST00000605109 1937 ntBASIC14.89□□□□□ -0.03
CXCL12P48061 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CXCL12P48061 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CXCL12P48061 IDH3B-212ENST00000613370 1400 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
CXCL12P48061 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC14.89□□□□□ -0.03
CXCL12P48061 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC14.89□□□□□ -0.03
CXCL12P48061 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
CXCL12P48061 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
CXCL12P48061 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
CXCL12P48061 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
CXCL12P48061 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CXCL12P48061 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC14.89□□□□□ -0.03
CXCL12P48061 SNRPN-203ENST00000400097 1605 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 58.2 ms