Protein–RNA interactions for Protein: Q9BZI7

UPF3B, Regulator of nonsense transcripts 3B, humanhuman

Known RBP Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3BQ9BZI7 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
UPF3BQ9BZI7 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
UPF3BQ9BZI7 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
UPF3BQ9BZI7 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC18.17■□□□□ 0.5
UPF3BQ9BZI7 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC18.17■□□□□ 0.5
UPF3BQ9BZI7 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC18.17■□□□□ 0.5
UPF3BQ9BZI7 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC18.17■□□□□ 0.5
UPF3BQ9BZI7 FAM207CP-201ENST00000443486 507 ntBASIC18.17■□□□□ 0.5
UPF3BQ9BZI7 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC18.17■□□□□ 0.5
UPF3BQ9BZI7 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC18.17■□□□□ 0.5
UPF3BQ9BZI7 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC18.17■□□□□ 0.5
UPF3BQ9BZI7 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC18.17■□□□□ 0.5
UPF3BQ9BZI7 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC18.17■□□□□ 0.5
UPF3BQ9BZI7 NAA60-208ENST00000570819 833 ntTSL 2 BASIC18.17■□□□□ 0.5
UPF3BQ9BZI7 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC18.17■□□□□ 0.5
UPF3BQ9BZI7 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC18.17■□□□□ 0.5
UPF3BQ9BZI7 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC18.17■□□□□ 0.5
UPF3BQ9BZI7 MIR6752-201ENST00000618442 71 ntBASIC18.17■□□□□ 0.5
UPF3BQ9BZI7 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC18.17■□□□□ 0.5
UPF3BQ9BZI7 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
UPF3BQ9BZI7 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
UPF3BQ9BZI7 AP001267.2-201ENST00000532619 2086 ntBASIC18.17■□□□□ 0.5
UPF3BQ9BZI7 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
UPF3BQ9BZI7 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
UPF3BQ9BZI7 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
UPF3BQ9BZI7 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
UPF3BQ9BZI7 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC18.17■□□□□ 0.5
UPF3BQ9BZI7 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC18.17■□□□□ 0.5
UPF3BQ9BZI7 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
UPF3BQ9BZI7 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
UPF3BQ9BZI7 KIAA0895L-202ENST00000561621 3500 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
UPF3BQ9BZI7 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC18.16■□□□□ 0.5
UPF3BQ9BZI7 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
UPF3BQ9BZI7 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
UPF3BQ9BZI7 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC18.16■□□□□ 0.5
UPF3BQ9BZI7 DRD5P1-201ENST00000456605 1438 ntBASIC18.16■□□□□ 0.5
UPF3BQ9BZI7 GPRC5C-202ENST00000392627 2988 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
UPF3BQ9BZI7 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
UPF3BQ9BZI7 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC18.16■□□□□ 0.5
UPF3BQ9BZI7 RASA3-201ENST00000334062 4191 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
UPF3BQ9BZI7 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC18.16■□□□□ 0.5
UPF3BQ9BZI7 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
UPF3BQ9BZI7 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC18.16■□□□□ 0.5
UPF3BQ9BZI7 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC18.16■□□□□ 0.5
UPF3BQ9BZI7 GPAT3-201ENST00000264409 2625 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
UPF3BQ9BZI7 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
UPF3BQ9BZI7 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
UPF3BQ9BZI7 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
UPF3BQ9BZI7 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC18.16■□□□□ 0.5
UPF3BQ9BZI7 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC18.16■□□□□ 0.5
UPF3BQ9BZI7 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC18.16■□□□□ 0.5
UPF3BQ9BZI7 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC18.16■□□□□ 0.5
UPF3BQ9BZI7 COQ6-210ENST00000554920 649 ntTSL 3 BASIC18.16■□□□□ 0.5
UPF3BQ9BZI7 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC18.16■□□□□ 0.5
UPF3BQ9BZI7 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC18.16■□□□□ 0.5
UPF3BQ9BZI7 RN7SL204P-201ENST00000582831 262 ntBASIC18.16■□□□□ 0.5
UPF3BQ9BZI7 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
UPF3BQ9BZI7 RNA5-8SN1-201ENST00000610460 153 ntBASIC18.16■□□□□ 0.5
UPF3BQ9BZI7 RNA5-8SN5-202ENST00000612463 153 ntBASIC18.16■□□□□ 0.5
UPF3BQ9BZI7 RNA5-8SN4-201ENST00000613359 153 ntBASIC18.16■□□□□ 0.5
UPF3BQ9BZI7 RNA5-8SN5-201ENST00000619471 153 ntBASIC18.16■□□□□ 0.5
UPF3BQ9BZI7 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
UPF3BQ9BZI7 AC126755.1-201ENST00000525846 6405 ntBASIC18.16■□□□□ 0.5
UPF3BQ9BZI7 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
UPF3BQ9BZI7 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
UPF3BQ9BZI7 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
UPF3BQ9BZI7 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC18.16■□□□□ 0.5
UPF3BQ9BZI7 UNC5A-201ENST00000329542 3812 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
UPF3BQ9BZI7 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC18.16■□□□□ 0.5
UPF3BQ9BZI7 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC18.16■□□□□ 0.5
UPF3BQ9BZI7 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
UPF3BQ9BZI7 PREP-201ENST00000369110 2905 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
UPF3BQ9BZI7 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
UPF3BQ9BZI7 PRKAG2-215ENST00000492843 2699 ntTSL 5 BASIC18.16■□□□□ 0.5
UPF3BQ9BZI7 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC18.15■□□□□ 0.5
UPF3BQ9BZI7 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
UPF3BQ9BZI7 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC18.15■□□□□ 0.5
UPF3BQ9BZI7 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
UPF3BQ9BZI7 ST3GAL3-208ENST00000361392 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
UPF3BQ9BZI7 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
UPF3BQ9BZI7 KCTD10-208ENST00000540089 3096 ntTSL 2 BASIC18.15■□□□□ 0.5
UPF3BQ9BZI7 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
UPF3BQ9BZI7 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
UPF3BQ9BZI7 PNPLA3-201ENST00000216180 2805 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
UPF3BQ9BZI7 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
UPF3BQ9BZI7 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
UPF3BQ9BZI7 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC18.15■□□□□ 0.5
UPF3BQ9BZI7 OR8S1-201ENST00000310194 1080 ntBASIC18.15■□□□□ 0.5
UPF3BQ9BZI7 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC18.15■□□□□ 0.5
UPF3BQ9BZI7 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
UPF3BQ9BZI7 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC18.15■□□□□ 0.5
UPF3BQ9BZI7 GNAQP1-201ENST00000444815 1067 ntBASIC18.15■□□□□ 0.5
UPF3BQ9BZI7 FAM86LP-201ENST00000478302 853 ntBASIC18.15■□□□□ 0.5
UPF3BQ9BZI7 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC18.15■□□□□ 0.5
UPF3BQ9BZI7 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC18.15■□□□□ 0.5
UPF3BQ9BZI7 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
UPF3BQ9BZI7 CR383656.12-201ENST00000549567 513 ntBASIC18.15■□□□□ 0.5
UPF3BQ9BZI7 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC18.15■□□□□ 0.5
UPF3BQ9BZI7 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
UPF3BQ9BZI7 AC107373.2-201ENST00000607735 490 ntBASIC18.15■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 54.7 ms