Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC13.51□□□□□ -0.25
SKA3Q8IX90 AC138028.2-202ENST00000567968 4528 ntTSL 2 BASIC13.51□□□□□ -0.25
SKA3Q8IX90 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
SKA3Q8IX90 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
SKA3Q8IX90 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
SKA3Q8IX90 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC13.51□□□□□ -0.25
SKA3Q8IX90 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC13.51□□□□□ -0.25
SKA3Q8IX90 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
SKA3Q8IX90 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
SKA3Q8IX90 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC13.51□□□□□ -0.25
SKA3Q8IX90 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC13.51□□□□□ -0.25
SKA3Q8IX90 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC13.51□□□□□ -0.25
SKA3Q8IX90 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC13.51□□□□□ -0.25
SKA3Q8IX90 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
SKA3Q8IX90 TGIF2-202ENST00000373874 3432 ntAPPRIS P1 TSL 2 BASIC13.51□□□□□ -0.25
SKA3Q8IX90 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC13.51□□□□□ -0.25
SKA3Q8IX90 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
SKA3Q8IX90 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
SKA3Q8IX90 GTF2I-212ENST00000573035 4548 ntAPPRIS P4 TSL 1 (best) BASIC13.51□□□□□ -0.25
SKA3Q8IX90 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
SKA3Q8IX90 ADAM15-203ENST00000356955 2949 ntAPPRIS P4 TSL 1 (best) BASIC13.5□□□□□ -0.25
SKA3Q8IX90 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
SKA3Q8IX90 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC13.5□□□□□ -0.25
SKA3Q8IX90 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC13.5□□□□□ -0.25
SKA3Q8IX90 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
SKA3Q8IX90 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
SKA3Q8IX90 KIAA1683-209ENST00000612316 2684 ntAPPRIS ALT2 TSL 5 BASIC13.5□□□□□ -0.25
SKA3Q8IX90 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC13.5□□□□□ -0.25
SKA3Q8IX90 WWC2-201ENST00000403733 8826 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
SKA3Q8IX90 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC13.5□□□□□ -0.25
SKA3Q8IX90 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
SKA3Q8IX90 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
SKA3Q8IX90 PHAX-201ENST00000297540 4288 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
SKA3Q8IX90 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
SKA3Q8IX90 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
SKA3Q8IX90 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
SKA3Q8IX90 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
SKA3Q8IX90 AC104457.1-201ENST00000401024 814 ntBASIC13.5□□□□□ -0.25
SKA3Q8IX90 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC13.5□□□□□ -0.25
SKA3Q8IX90 AL442647.2-201ENST00000429864 857 ntBASIC13.5□□□□□ -0.25
SKA3Q8IX90 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC13.5□□□□□ -0.25
SKA3Q8IX90 AC004066.1-201ENST00000502488 802 ntBASIC13.5□□□□□ -0.25
SKA3Q8IX90 HNRNPA1P13-201ENST00000510646 963 ntBASIC13.5□□□□□ -0.25
SKA3Q8IX90 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC13.5□□□□□ -0.25
SKA3Q8IX90 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC13.5□□□□□ -0.25
SKA3Q8IX90 RPGRIP1-210ENST00000556336 2955 ntTSL 5 BASIC13.5□□□□□ -0.25
SKA3Q8IX90 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC13.5□□□□□ -0.25
SKA3Q8IX90 AL359711.2-201ENST00000563105 872 ntBASIC13.5□□□□□ -0.25
SKA3Q8IX90 AC120045.2-201ENST00000567334 178 ntBASIC13.5□□□□□ -0.25
SKA3Q8IX90 COX11-202ENST00000571584 1108 ntTSL 2 BASIC13.5□□□□□ -0.25
SKA3Q8IX90 SPDYE22P-201ENST00000582158 798 ntBASIC13.5□□□□□ -0.25
SKA3Q8IX90 MIR3197-201ENST00000582241 73 ntBASIC13.5□□□□□ -0.25
SKA3Q8IX90 INO80C-210ENST00000590757 595 ntTSL 2 BASIC13.5□□□□□ -0.25
SKA3Q8IX90 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC13.5□□□□□ -0.25
SKA3Q8IX90 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
SKA3Q8IX90 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC13.5□□□□□ -0.25
SKA3Q8IX90 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC13.5□□□□□ -0.25
SKA3Q8IX90 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC13.5□□□□□ -0.25
SKA3Q8IX90 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
SKA3Q8IX90 DDX59-206ENST00000447706 2900 ntTSL 2 BASIC13.5□□□□□ -0.25
SKA3Q8IX90 PPP1R16A-201ENST00000292539 2722 ntAPPRIS P1 TSL 2 BASIC13.5□□□□□ -0.25
SKA3Q8IX90 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC13.5□□□□□ -0.25
SKA3Q8IX90 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC13.5□□□□□ -0.25
SKA3Q8IX90 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
SKA3Q8IX90 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
SKA3Q8IX90 ACIN1-203ENST00000357481 2563 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
SKA3Q8IX90 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC13.5□□□□□ -0.25
SKA3Q8IX90 DNM1-203ENST00000393594 3245 ntAPPRIS ALT1 TSL 2 BASIC13.5□□□□□ -0.25
SKA3Q8IX90 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
SKA3Q8IX90 PARN-202ENST00000420015 2360 ntTSL 2 BASIC13.5□□□□□ -0.25
SKA3Q8IX90 AL138799.1-201ENST00000448213 1675 ntBASIC13.5□□□□□ -0.25
SKA3Q8IX90 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC13.5□□□□□ -0.25
SKA3Q8IX90 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC13.5□□□□□ -0.25
SKA3Q8IX90 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC13.5□□□□□ -0.25
SKA3Q8IX90 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
SKA3Q8IX90 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
SKA3Q8IX90 MROH4P-201ENST00000431302 1578 ntBASIC13.49□□□□□ -0.25
SKA3Q8IX90 LINC00528-201ENST00000600723 2160 ntBASIC13.49□□□□□ -0.25
SKA3Q8IX90 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
SKA3Q8IX90 TNRC18-203ENST00000399537 10572 ntAPPRIS ALT2 TSL 5 BASIC13.49□□□□□ -0.25
SKA3Q8IX90 TNRC18-205ENST00000430969 10562 ntAPPRIS P2 TSL 5 BASIC13.49□□□□□ -0.25
SKA3Q8IX90 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC13.49□□□□□ -0.25
SKA3Q8IX90 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
SKA3Q8IX90 ZBTB45P1-201ENST00000452761 1456 ntBASIC13.49□□□□□ -0.25
SKA3Q8IX90 ATXN10-202ENST00000381061 3135 ntTSL 2 BASIC13.49□□□□□ -0.25
SKA3Q8IX90 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
SKA3Q8IX90 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC13.49□□□□□ -0.25
SKA3Q8IX90 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC13.49□□□□□ -0.25
SKA3Q8IX90 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC13.49□□□□□ -0.25
SKA3Q8IX90 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
SKA3Q8IX90 HSD17B4-222ENST00000515320 2494 ntTSL 2 BASIC13.49□□□□□ -0.25
SKA3Q8IX90 MECR-202ENST00000373791 2416 ntTSL 2 BASIC13.49□□□□□ -0.25
SKA3Q8IX90 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC13.49□□□□□ -0.25
SKA3Q8IX90 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
SKA3Q8IX90 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC13.49□□□□□ -0.25
SKA3Q8IX90 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
SKA3Q8IX90 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC13.49□□□□□ -0.25
SKA3Q8IX90 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
SKA3Q8IX90 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
SKA3Q8IX90 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms