Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
SYNE3Q6ZMZ3 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
SYNE3Q6ZMZ3 UBE3A-207ENST00000614096 8741 ntAPPRIS ALT1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SYNE3Q6ZMZ3 AFDN-203ENST00000366806 5962 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
SYNE3Q6ZMZ3 RER1-203ENST00000378513 3000 ntTSL 3 BASIC17.91■□□□□ 0.46
SYNE3Q6ZMZ3 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
SYNE3Q6ZMZ3 AMOTL2-201ENST00000249883 4488 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
SYNE3Q6ZMZ3 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SYNE3Q6ZMZ3 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SYNE3Q6ZMZ3 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SYNE3Q6ZMZ3 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC17.91■□□□□ 0.46
SYNE3Q6ZMZ3 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC17.91■□□□□ 0.46
SYNE3Q6ZMZ3 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SYNE3Q6ZMZ3 AL359258.3-201ENST00000622910 2331 ntBASIC17.91■□□□□ 0.46
SYNE3Q6ZMZ3 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
SYNE3Q6ZMZ3 CALY-203ENST00000368558 825 ntTSL 5 BASIC17.91■□□□□ 0.46
SYNE3Q6ZMZ3 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
SYNE3Q6ZMZ3 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
SYNE3Q6ZMZ3 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
SYNE3Q6ZMZ3 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC17.91■□□□□ 0.46
SYNE3Q6ZMZ3 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC17.91■□□□□ 0.46
SYNE3Q6ZMZ3 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
SYNE3Q6ZMZ3 AC011495.1-201ENST00000498085 584 ntBASIC17.91■□□□□ 0.46
SYNE3Q6ZMZ3 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC17.91■□□□□ 0.46
SYNE3Q6ZMZ3 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC17.91■□□□□ 0.46
SYNE3Q6ZMZ3 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
SYNE3Q6ZMZ3 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC17.91■□□□□ 0.46
SYNE3Q6ZMZ3 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC17.91■□□□□ 0.46
SYNE3Q6ZMZ3 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC17.91■□□□□ 0.46
SYNE3Q6ZMZ3 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC17.91■□□□□ 0.46
SYNE3Q6ZMZ3 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC17.91■□□□□ 0.46
SYNE3Q6ZMZ3 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC17.91■□□□□ 0.46
SYNE3Q6ZMZ3 METTL26-214ENST00000614890 801 ntTSL 3 BASIC17.91■□□□□ 0.46
SYNE3Q6ZMZ3 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC17.91■□□□□ 0.46
SYNE3Q6ZMZ3 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC17.91■□□□□ 0.46
SYNE3Q6ZMZ3 AC025048.6-201ENST00000634326 1161 ntBASIC17.91■□□□□ 0.46
SYNE3Q6ZMZ3 AL358472.5-202ENST00000641448 1267 ntBASIC17.91■□□□□ 0.46
SYNE3Q6ZMZ3 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SYNE3Q6ZMZ3 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
SYNE3Q6ZMZ3 NUDT16-202ENST00000521288 6108 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SYNE3Q6ZMZ3 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
SYNE3Q6ZMZ3 PCDH17-201ENST00000377918 8232 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SYNE3Q6ZMZ3 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC17.91■□□□□ 0.46
SYNE3Q6ZMZ3 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
SYNE3Q6ZMZ3 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
SYNE3Q6ZMZ3 YTHDF3-216ENST00000623280 5193 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
SYNE3Q6ZMZ3 SPTLC2-201ENST00000216484 8170 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SYNE3Q6ZMZ3 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC17.91■□□□□ 0.46
SYNE3Q6ZMZ3 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
SYNE3Q6ZMZ3 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC17.91■□□□□ 0.46
SYNE3Q6ZMZ3 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC17.91■□□□□ 0.46
SYNE3Q6ZMZ3 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC17.9■□□□□ 0.46
SYNE3Q6ZMZ3 VWF-201ENST00000261405 8838 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SYNE3Q6ZMZ3 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
SYNE3Q6ZMZ3 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
SYNE3Q6ZMZ3 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
SYNE3Q6ZMZ3 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
SYNE3Q6ZMZ3 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
SYNE3Q6ZMZ3 APOLD1-201ENST00000326765 4724 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
SYNE3Q6ZMZ3 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
SYNE3Q6ZMZ3 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SYNE3Q6ZMZ3 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
SYNE3Q6ZMZ3 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC17.9■□□□□ 0.46
SYNE3Q6ZMZ3 AGER-206ENST00000375070 1463 ntTSL 5 BASIC17.9■□□□□ 0.46
SYNE3Q6ZMZ3 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC17.9■□□□□ 0.46
SYNE3Q6ZMZ3 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
SYNE3Q6ZMZ3 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
SYNE3Q6ZMZ3 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SYNE3Q6ZMZ3 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SYNE3Q6ZMZ3 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SYNE3Q6ZMZ3 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SYNE3Q6ZMZ3 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
SYNE3Q6ZMZ3 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC17.9■□□□□ 0.46
SYNE3Q6ZMZ3 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SYNE3Q6ZMZ3 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC17.9■□□□□ 0.46
SYNE3Q6ZMZ3 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
SYNE3Q6ZMZ3 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC17.9■□□□□ 0.46
SYNE3Q6ZMZ3 AC114812.1-204ENST00000449669 728 ntBASIC17.9■□□□□ 0.46
SYNE3Q6ZMZ3 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC17.9■□□□□ 0.46
SYNE3Q6ZMZ3 RN7SL752P-201ENST00000463779 287 ntBASIC17.9■□□□□ 0.46
SYNE3Q6ZMZ3 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC17.9■□□□□ 0.46
SYNE3Q6ZMZ3 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
SYNE3Q6ZMZ3 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC17.9■□□□□ 0.46
SYNE3Q6ZMZ3 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC17.9■□□□□ 0.46
SYNE3Q6ZMZ3 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SYNE3Q6ZMZ3 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
SYNE3Q6ZMZ3 NEU3-203ENST00000529024 581 ntTSL 3 BASIC17.9■□□□□ 0.46
SYNE3Q6ZMZ3 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC17.9■□□□□ 0.46
SYNE3Q6ZMZ3 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC17.9■□□□□ 0.46
SYNE3Q6ZMZ3 AP001063.1-201ENST00000568332 529 ntBASIC17.9■□□□□ 0.46
SYNE3Q6ZMZ3 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC17.9■□□□□ 0.46
SYNE3Q6ZMZ3 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC17.9■□□□□ 0.46
SYNE3Q6ZMZ3 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
SYNE3Q6ZMZ3 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SYNE3Q6ZMZ3 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC17.9■□□□□ 0.46
SYNE3Q6ZMZ3 FAM84B-201ENST00000304916 5404 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SYNE3Q6ZMZ3 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SYNE3Q6ZMZ3 WSCD1-201ENST00000317744 5819 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SYNE3Q6ZMZ3 PES1-204ENST00000402284 2144 ntTSL 5 BASIC17.9■□□□□ 0.46
SYNE3Q6ZMZ3 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC17.9■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 41.9 ms