Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
COL8A1P27658 AL139339.1-201ENST00000411906 657 ntTSL 2 BASIC13.26□□□□□ -0.29
COL8A1P27658 CCDC51-202ENST00000412398 1385 ntTSL 2 BASIC13.26□□□□□ -0.29
COL8A1P27658 PSMA1-202ENST00000418988 1266 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
COL8A1P27658 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC13.26□□□□□ -0.29
COL8A1P27658 NUBP1-202ENST00000433392 1185 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
COL8A1P27658 FAM168A-204ENST00000450446 1364 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
COL8A1P27658 AC091179.2-201ENST00000495536 532 ntTSL 3 BASIC13.26□□□□□ -0.29
COL8A1P27658 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
COL8A1P27658 IGHV3-37-201ENST00000518544 340 ntBASIC13.26□□□□□ -0.29
COL8A1P27658 AC104561.3-201ENST00000518590 715 ntTSL 5 BASIC13.26□□□□□ -0.29
COL8A1P27658 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC13.26□□□□□ -0.29
COL8A1P27658 AP001160.1-201ENST00000535817 565 ntTSL 3 BASIC13.26□□□□□ -0.29
COL8A1P27658 AL160314.3-201ENST00000556041 767 ntBASIC13.26□□□□□ -0.29
COL8A1P27658 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC13.26□□□□□ -0.29
COL8A1P27658 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC13.26□□□□□ -0.29
COL8A1P27658 NAT9-211ENST00000580632 799 ntTSL 3 BASIC13.26□□□□□ -0.29
COL8A1P27658 MIR4649-201ENST00000582839 64 ntBASIC13.26□□□□□ -0.29
COL8A1P27658 PLIN5-202ENST00000586133 907 ntTSL 3 BASIC13.26□□□□□ -0.29
COL8A1P27658 NFIC-204ENST00000586919 1221 ntTSL 5 BASIC13.26□□□□□ -0.29
COL8A1P27658 AC005901.1-201ENST00000592766 552 ntTSL 4 BASIC13.26□□□□□ -0.29
COL8A1P27658 Metazoa_SRP.172-201ENST00000621807 265 ntBASIC13.26□□□□□ -0.29
COL8A1P27658 AC005915.1-201ENST00000624912 2018 ntBASIC13.26□□□□□ -0.29
COL8A1P27658 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC13.26□□□□□ -0.29
COL8A1P27658 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL8A1P27658 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL8A1P27658 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL8A1P27658 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL8A1P27658 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL8A1P27658 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC13.26□□□□□ -0.29
COL8A1P27658 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL8A1P27658 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
COL8A1P27658 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC13.25□□□□□ -0.29
COL8A1P27658 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC13.25□□□□□ -0.29
COL8A1P27658 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
COL8A1P27658 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC13.25□□□□□ -0.29
COL8A1P27658 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC13.25□□□□□ -0.29
COL8A1P27658 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC13.25□□□□□ -0.29
COL8A1P27658 SERPING1-204ENST00000378324 1751 ntAPPRIS ALT2 TSL 2 BASIC13.25□□□□□ -0.29
COL8A1P27658 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
COL8A1P27658 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
COL8A1P27658 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
COL8A1P27658 SLCO6A1-207ENST00000513675 1611 ntTSL 2 BASIC13.25□□□□□ -0.29
COL8A1P27658 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
COL8A1P27658 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC13.25□□□□□ -0.29
COL8A1P27658 PLA1A-204ENST00000488919 1456 ntTSL 2 BASIC13.25□□□□□ -0.29
COL8A1P27658 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
COL8A1P27658 MIR22HG-201ENST00000334146 1383 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
COL8A1P27658 AC090515.2-201ENST00000500929 1396 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
COL8A1P27658 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
COL8A1P27658 UNC13B-203ENST00000396787 5293 ntAPPRIS ALT2 TSL 5 BASIC13.25□□□□□ -0.29
COL8A1P27658 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
COL8A1P27658 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
COL8A1P27658 RDH5-201ENST00000257895 1269 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
COL8A1P27658 RN7SKP214-201ENST00000364208 315 ntBASIC13.25□□□□□ -0.29
COL8A1P27658 NRM-202ENST00000376420 1228 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
COL8A1P27658 TMEM14B-202ENST00000379542 975 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
COL8A1P27658 AL590093.1-201ENST00000416119 623 ntTSL 5 BASIC13.25□□□□□ -0.29
COL8A1P27658 AL138731.1-201ENST00000452624 739 ntTSL 3 BASIC13.25□□□□□ -0.29
COL8A1P27658 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC13.25□□□□□ -0.29
COL8A1P27658 AC009065.3-201ENST00000562027 627 ntTSL 5 BASIC13.25□□□□□ -0.29
COL8A1P27658 AC068025.1-201ENST00000577218 762 ntTSL 3 BASIC13.25□□□□□ -0.29
COL8A1P27658 RN7SL718P-201ENST00000581254 303 ntBASIC13.25□□□□□ -0.29
COL8A1P27658 AC005779.2-201ENST00000593083 550 ntAPPRIS P1 TSL 4 BASIC13.25□□□□□ -0.29
COL8A1P27658 PRMT5-AS1-206ENST00000599580 847 ntTSL 5 BASIC13.25□□□□□ -0.29
COL8A1P27658 AC051619.9-201ENST00000623237 597 ntBASIC13.25□□□□□ -0.29
COL8A1P27658 AL161773.1-201ENST00000624845 863 ntBASIC13.25□□□□□ -0.29
COL8A1P27658 GLIDR-205ENST00000640674 884 ntTSL 5 BASIC13.25□□□□□ -0.29
COL8A1P27658 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
COL8A1P27658 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
COL8A1P27658 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC13.25□□□□□ -0.29
COL8A1P27658 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
COL8A1P27658 MICAL3-206ENST00000441493 9445 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
COL8A1P27658 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
COL8A1P27658 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
COL8A1P27658 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
COL8A1P27658 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC13.25□□□□□ -0.29
COL8A1P27658 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
COL8A1P27658 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
COL8A1P27658 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
COL8A1P27658 AC068987.4-201ENST00000562343 2094 ntTSL 5 BASIC13.25□□□□□ -0.29
COL8A1P27658 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
COL8A1P27658 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
COL8A1P27658 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
COL8A1P27658 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
COL8A1P27658 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
COL8A1P27658 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
COL8A1P27658 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
COL8A1P27658 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
COL8A1P27658 RCHY1-202ENST00000380840 1735 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
COL8A1P27658 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC13.25□□□□□ -0.29
COL8A1P27658 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC13.24□□□□□ -0.29
COL8A1P27658 CCDC50-201ENST00000392455 8429 ntAPPRIS ALT1 TSL 1 (best) BASIC13.24□□□□□ -0.29
COL8A1P27658 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC13.24□□□□□ -0.29
COL8A1P27658 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC13.24□□□□□ -0.29
COL8A1P27658 WT1-209ENST00000530998 2421 ntTSL 2 BASIC13.24□□□□□ -0.29
COL8A1P27658 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
COL8A1P27658 OPA1-204ENST00000361828 6381 ntAPPRIS ALT1 TSL 5 BASIC13.24□□□□□ -0.29
COL8A1P27658 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
COL8A1P27658 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 56.2 ms