Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
HOXD4P09016 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
HOXD4P09016 ARVCF-203ENST00000406259 2871 ntAPPRIS ALT2 TSL 5 BASIC13.86□□□□□ -0.19
HOXD4P09016 PML-208ENST00000436891 3010 ntAPPRIS ALT2 TSL 5 BASIC13.86□□□□□ -0.19
HOXD4P09016 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC13.86□□□□□ -0.19
HOXD4P09016 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
HOXD4P09016 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
HOXD4P09016 CALHM1-201ENST00000329905 3053 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
HOXD4P09016 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC13.86□□□□□ -0.19
HOXD4P09016 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
HOXD4P09016 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
HOXD4P09016 REXO1L2P-201ENST00000425429 2069 ntBASIC13.86□□□□□ -0.19
HOXD4P09016 SLC2A11-223ENST00000611880 3264 ntTSL 2 BASIC13.86□□□□□ -0.19
HOXD4P09016 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC13.85□□□□□ -0.19
HOXD4P09016 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
HOXD4P09016 AL138799.1-201ENST00000448213 1675 ntBASIC13.85□□□□□ -0.19
HOXD4P09016 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
HOXD4P09016 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
HOXD4P09016 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC13.85□□□□□ -0.19
HOXD4P09016 AC020907.1-201ENST00000616460 1350 ntBASIC13.85□□□□□ -0.19
HOXD4P09016 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
HOXD4P09016 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC13.85□□□□□ -0.19
HOXD4P09016 OBSL1-202ENST00000373873 3297 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
HOXD4P09016 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC13.85□□□□□ -0.19
HOXD4P09016 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
HOXD4P09016 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
HOXD4P09016 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC13.85□□□□□ -0.19
HOXD4P09016 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC13.85□□□□□ -0.19
HOXD4P09016 LPAR5-201ENST00000329858 3171 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
HOXD4P09016 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
HOXD4P09016 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
HOXD4P09016 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC13.85□□□□□ -0.19
HOXD4P09016 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
HOXD4P09016 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC13.85□□□□□ -0.19
HOXD4P09016 USB1-202ENST00000423271 1217 ntTSL 2 BASIC13.85□□□□□ -0.19
HOXD4P09016 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC13.85□□□□□ -0.19
HOXD4P09016 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC13.85□□□□□ -0.19
HOXD4P09016 YBX1P6-201ENST00000442962 1002 ntBASIC13.85□□□□□ -0.19
HOXD4P09016 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC13.85□□□□□ -0.19
HOXD4P09016 CD74-212ENST00000524315 584 ntTSL 5 BASIC13.85□□□□□ -0.19
HOXD4P09016 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC13.85□□□□□ -0.19
HOXD4P09016 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
HOXD4P09016 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC13.85□□□□□ -0.19
HOXD4P09016 AC023310.1-201ENST00000554836 735 ntBASIC13.85□□□□□ -0.19
HOXD4P09016 AC000032.1-201ENST00000562538 491 ntTSL 2 BASIC13.85□□□□□ -0.19
HOXD4P09016 AC120498.3-201ENST00000568884 542 ntTSL 4 BASIC13.85□□□□□ -0.19
HOXD4P09016 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC13.85□□□□□ -0.19
HOXD4P09016 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC13.85□□□□□ -0.19
HOXD4P09016 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC13.85□□□□□ -0.19
HOXD4P09016 GPR39-203ENST00000622084 900 ntTSL 5 BASIC13.85□□□□□ -0.19
HOXD4P09016 BX539320.1-201ENST00000623759 877 ntBASIC13.85□□□□□ -0.19
HOXD4P09016 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
HOXD4P09016 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
HOXD4P09016 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC13.85□□□□□ -0.19
HOXD4P09016 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
HOXD4P09016 GAS2L1-209ENST00000618518 3382 ntAPPRIS P1 TSL 2 BASIC13.85□□□□□ -0.19
HOXD4P09016 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC13.85□□□□□ -0.19
HOXD4P09016 RSPRY1-202ENST00000537866 3586 ntAPPRIS P1 TSL 2 BASIC13.85□□□□□ -0.19
HOXD4P09016 AL603832.2-201ENST00000566195 2125 ntBASIC13.85□□□□□ -0.19
HOXD4P09016 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
HOXD4P09016 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
HOXD4P09016 LINC00987-201ENST00000427111 2472 ntTSL 2 BASIC13.85□□□□□ -0.19
HOXD4P09016 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC13.85□□□□□ -0.19
HOXD4P09016 SEMA4D-204ENST00000420101 1837 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
HOXD4P09016 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC13.85□□□□□ -0.19
HOXD4P09016 ITGB2-208ENST00000397857 2813 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
HOXD4P09016 ARHGAP9-213ENST00000550288 2818 ntTSL 2 BASIC13.85□□□□□ -0.19
HOXD4P09016 MORC4-202ENST00000355610 3834 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
HOXD4P09016 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
HOXD4P09016 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC13.85□□□□□ -0.19
HOXD4P09016 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
HOXD4P09016 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC13.85□□□□□ -0.19
HOXD4P09016 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
HOXD4P09016 GPD1L-201ENST00000282541 4060 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
HOXD4P09016 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
HOXD4P09016 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
HOXD4P09016 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
HOXD4P09016 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC13.84□□□□□ -0.19
HOXD4P09016 UCKL1-AS1-201ENST00000623569 3602 ntBASIC13.84□□□□□ -0.19
HOXD4P09016 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
HOXD4P09016 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC13.84□□□□□ -0.19
HOXD4P09016 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC13.84□□□□□ -0.19
HOXD4P09016 C5orf66-206ENST00000624272 2479 ntTSL 2 BASIC13.84□□□□□ -0.19
HOXD4P09016 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC13.84□□□□□ -0.19
HOXD4P09016 USE1-206ENST00000595101 1776 ntTSL 2 BASIC13.84□□□□□ -0.19
HOXD4P09016 ZFYVE28-211ENST00000515312 3247 ntAPPRIS ALT2 TSL 2 BASIC13.84□□□□□ -0.19
HOXD4P09016 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
HOXD4P09016 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
HOXD4P09016 NUTM2E-201ENST00000429984 3292 ntAPPRIS P5 TSL 5 BASIC13.84□□□□□ -0.19
HOXD4P09016 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC13.84□□□□□ -0.19
HOXD4P09016 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
HOXD4P09016 HIST1H2AD-201ENST00000341023 393 ntAPPRIS P1 BASIC13.84□□□□□ -0.19
HOXD4P09016 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC13.84□□□□□ -0.19
HOXD4P09016 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
HOXD4P09016 AL645937.2-201ENST00000396808 931 ntBASIC13.84□□□□□ -0.19
HOXD4P09016 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
HOXD4P09016 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC13.84□□□□□ -0.19
HOXD4P09016 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC13.84□□□□□ -0.19
HOXD4P09016 AC114812.1-204ENST00000449669 728 ntBASIC13.84□□□□□ -0.19
HOXD4P09016 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC13.84□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 56 ms