Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 FHOD3-201ENST00000257209 4967 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
VIMP08670 HNRNPH1-204ENST00000442819 2248 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
VIMP08670 PDE2A-206ENST00000444035 4193 ntAPPRIS ALT1 TSL 5 BASIC15.35■□□□□ 0.05
VIMP08670 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
VIMP08670 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
VIMP08670 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC15.34■□□□□ 0.05
VIMP08670 PRELP-201ENST00000343110 5747 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
VIMP08670 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
VIMP08670 ADAMTS13-202ENST00000356589 4349 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
VIMP08670 GPR88-201ENST00000315033 3491 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
VIMP08670 POLRMT-202ENST00000588649 3835 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
VIMP08670 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC15.34■□□□□ 0.05
VIMP08670 PARP3-203ENST00000431474 2360 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
VIMP08670 AC025594.2-201ENST00000609480 3902 ntAPPRIS P1 TSL 3 BASIC15.34■□□□□ 0.05
VIMP08670 NOTCH1-201ENST00000277541 9371 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
VIMP08670 CNTN1-203ENST00000547702 3033 ntTSL 2 BASIC15.34■□□□□ 0.05
VIMP08670 DSN1-207ENST00000448110 2129 ntAPPRIS ALT2 TSL 2 BASIC15.34■□□□□ 0.05
VIMP08670 CASKIN2-202ENST00000433559 3950 ntTSL 2 BASIC15.34■□□□□ 0.05
VIMP08670 WASHC5-202ENST00000517845 3667 ntTSL 2 BASIC15.34■□□□□ 0.05
VIMP08670 SCARF1-201ENST00000263071 3443 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
VIMP08670 FAM189A1-201ENST00000261275 4705 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
VIMP08670 PPFIA4-202ENST00000295706 6395 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
VIMP08670 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC15.34■□□□□ 0.05
VIMP08670 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC15.34■□□□□ 0.05
VIMP08670 TSPY19P-201ENST00000418461 509 ntBASIC15.34■□□□□ 0.05
VIMP08670 TSPY18P-201ENST00000441642 509 ntBASIC15.34■□□□□ 0.05
VIMP08670 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC15.34■□□□□ 0.05
VIMP08670 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
VIMP08670 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC15.34■□□□□ 0.05
VIMP08670 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC15.34■□□□□ 0.05
VIMP08670 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC15.34■□□□□ 0.05
VIMP08670 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
VIMP08670 DKKL1-202ENST00000594268 524 ntAPPRIS ALT2 TSL 2 BASIC15.34■□□□□ 0.05
VIMP08670 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
VIMP08670 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
VIMP08670 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
VIMP08670 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC15.34■□□□□ 0.05
VIMP08670 MYO1C-218ENST00000575158 4804 ntAPPRIS P3 TSL 5 BASIC15.34■□□□□ 0.05
VIMP08670 AC092506.1-201ENST00000634580 2275 ntTSL 5 BASIC15.34■□□□□ 0.05
VIMP08670 RNF145-202ENST00000424310 3613 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
VIMP08670 BRPF1-205ENST00000433861 4304 ntTSL 2 BASIC15.34■□□□□ 0.05
VIMP08670 NFE2L2-202ENST00000397063 2651 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
VIMP08670 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
VIMP08670 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
VIMP08670 B3GNT5-202ENST00000460419 3368 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
VIMP08670 SERPINA4-203ENST00000557004 2012 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
VIMP08670 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC15.34■□□□□ 0.05
VIMP08670 RASSF3-204ENST00000542104 3492 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
VIMP08670 EPB41L1-202ENST00000338074 6266 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
VIMP08670 TP53I11-222ENST00000616990 3567 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
VIMP08670 KLHL9-201ENST00000359039 5710 ntAPPRIS P1 BASIC15.34■□□□□ 0.05
VIMP08670 MCHR1-201ENST00000249016 2851 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
VIMP08670 MED12L-202ENST00000309237 2862 ntAPPRIS ALT2 TSL 2 BASIC15.34■□□□□ 0.05
VIMP08670 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
VIMP08670 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC15.33■□□□□ 0.05
VIMP08670 AC012508.2-201ENST00000567613 1472 ntBASIC15.33■□□□□ 0.05
VIMP08670 PEX5L-211ENST00000472994 2235 ntAPPRIS ALT2 TSL 2 BASIC15.33■□□□□ 0.05
VIMP08670 C10orf71-201ENST00000374144 5230 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
VIMP08670 RCAN3-207ENST00000538532 2640 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
VIMP08670 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
VIMP08670 GRIK4-202ENST00000438375 4214 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
VIMP08670 DNAAF5-202ENST00000403952 1907 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
VIMP08670 LINC00479-201ENST00000412102 2033 ntTSL 2 BASIC15.33■□□□□ 0.04
VIMP08670 IGF2BP2-202ENST00000382199 3688 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
VIMP08670 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC15.33■□□□□ 0.04
VIMP08670 ZNF362-201ENST00000373428 2936 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
VIMP08670 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
VIMP08670 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC15.33■□□□□ 0.04
VIMP08670 MORC4-202ENST00000355610 3834 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
VIMP08670 CENPM-204ENST00000402420 688 ntTSL 5 BASIC15.33■□□□□ 0.04
VIMP08670 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
VIMP08670 AC140658.5-201ENST00000438532 169 ntBASIC15.33■□□□□ 0.04
VIMP08670 EEF1DP4-201ENST00000446006 880 ntBASIC15.33■□□□□ 0.04
VIMP08670 TPT1P11-201ENST00000458482 498 ntBASIC15.33■□□□□ 0.04
VIMP08670 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC15.33■□□□□ 0.04
VIMP08670 NMU-203ENST00000507338 658 ntTSL 3 BASIC15.33■□□□□ 0.04
VIMP08670 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC15.33■□□□□ 0.04
VIMP08670 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC15.33■□□□□ 0.04
VIMP08670 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
VIMP08670 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC15.33■□□□□ 0.04
VIMP08670 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC15.33■□□□□ 0.04
VIMP08670 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
VIMP08670 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
VIMP08670 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
VIMP08670 PROKR1-201ENST00000303786 4273 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
VIMP08670 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC15.33■□□□□ 0.04
VIMP08670 WIZ-202ENST00000389282 4067 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
VIMP08670 LINC01271-201ENST00000441214 2250 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
VIMP08670 XG-201ENST00000381174 2315 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
VIMP08670 LDB3-209ENST00000623056 2314 ntTSL 5 BASIC15.33■□□□□ 0.04
VIMP08670 IFITM10-201ENST00000340134 3706 ntAPPRIS P1 TSL 3 BASIC15.33■□□□□ 0.04
VIMP08670 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
VIMP08670 FEM1A-201ENST00000269856 9593 ntAPPRIS P1 BASIC15.33■□□□□ 0.04
VIMP08670 CDHR5-203ENST00000397542 3489 ntAPPRIS P4 TSL 1 (best) BASIC15.33■□□□□ 0.04
VIMP08670 TONSL-201ENST00000409379 4502 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
VIMP08670 RRAGD-201ENST00000359203 4042 ntTSL 2 BASIC15.33■□□□□ 0.04
VIMP08670 NRXN1-207ENST00000404971 7578 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
VIMP08670 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC15.33■□□□□ 0.04
VIMP08670 KCNN2-206ENST00000512097 3076 ntAPPRIS P2 TSL 5 BASIC15.32■□□□□ 0.04
VIMP08670 CACNA2D4-220ENST00000585732 2566 ntTSL 5 BASIC15.32■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 252.5 ms